| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 90.9% | 129.6 / 6.8 | 44 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base A (22/18); total (22/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGC > NC_002947/278595‑278884 | aTGTCGCTACAGCTGATCGCGACAGACGTGTGATGGTCAGGTGGTCC‑GGTATATATACAATAATGATTTATAAAATTTTTTTGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑t > 6:123232/1‑148 (MQ=255) gTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑T‑aaa > 1:83137/1‑148 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTa < 3:33930/149‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCTGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTa > 1:202432/1‑149 (MQ=255) gATCGCGACAGACGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTaca > 8:71285/1‑149 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTacac < 3:7428/148‑1 (MQ=255) cgACAGACGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACAt > 5:263404/1‑149 (MQ=255) cGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 7:98957/149‑1 (MQ=255) tgCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGTGGGATTTGTTACAGAGGTGCCGGC‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACAAATGCCTCAAGaa > 2:237180/1‑147 (MQ=39) gCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt > 4:104859/1‑149 (MQ=255) cTGGTCCGGTGGTAC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 8:248809/148‑1 (MQ=255) tggtccggtggtcc‑ggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 7:71285/149‑1 (MQ=255) gtggtcc‑ggtATATATACCCTAATGATTTATAAATTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGt < 5:62278/149‑1 (MQ=255) gtggtcc‑ggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGt > 5:303915/1‑149 (MQ=255) gtcc‑ggtATATATAGCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑ACCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAg > 7:262794/1‑148 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 2:83137/149‑1 (MQ=255) tatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt < 6:263404/148‑1 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTc > 4:82820/1‑100 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTc < 3:82820/100‑1 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGa > 4:107168/1‑148 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGa > 8:86626/1‑147 (MQ=255) ataAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAcc < 5:166382/135‑1 (MQ=255) ataAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAcc > 6:166382/1‑135 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCAATGTAGGAGCGGGTTTACCCGCGAAAGGGCCgg > 4:260919/1‑148 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGAGTGATTCGCGGG‑TAAA‑AACGCTACTACACACAAGCCTCAAGATCtgt > 1:253105/1‑113 (MQ=255) aaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTc > 6:222502/1‑101 (MQ=255) aTTTTTATTAATTAATTTTTTTTAATATTTATAGATGGGGTTTTTGTTACTGTGGTGCCGGG‑CT‑CTTGGGGGT‑A‑AACCCCGCTCATACACACATGCCTCAATTTTTTTGAAGTTTAGTTGGGGTTTTACCCGCGAAAGGGCCGGAACAg < 2:129058/149‑1 (MQ=255) aTTTTTATTAATTAATTTTTTGTAATATTTATATAAGGGGTTTTTGTTACTGTGGTGCGGGG‑CT‑CTTCGCGGT‑TAAA‑CCCTCTCCTACACACATGCCTCAAGTTCTGTGCATTGTTGTAGGGGTTTTACCCGCGAAAGGGCCGGAACAg < 8:262794/149‑1 (MQ=255) actaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCgg < 2:202311/149‑1 (MQ=255) ctaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAACATCTGTGCACTGTAGCAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 5:227907/149‑1 (MQ=255) ctTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc > 1:11950/1‑149 (MQ=255) atTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCCCAGTCCCGAg > 8:150653/1‑149 (MQ=255) tttATATATGGGGTATTTGTTACAGCGGCGCCGGG‑CT‑CTTCGCGGG‑A‑AACCCCGCTCCTCCACACATGCCTCAATATCTGTCCACTGTTGGTGGGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg < 2:141157/148‑1 (MQ=255) taGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAAc < 2:11950/148‑1 (MQ=255) aGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCGTCAAGATCTGTGCACTGTAGGAGCGGGTTTAACCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACtt > 3:273034/1‑149 (MQ=255) aaGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCACGATCTGGGCACTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc < 3:104859/149‑1 (MQ=39) aGGGGGATTTGTTACAGAGGTGCGGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcg < 3:260919/149‑1 (MQ=255) aGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc < 7:86626/148‑1 (MQ=255) tactgtggTGCGGGG‑CT‑CTTCGGGGGAA‑AA‑CCCGCTCATACACACATGCTTCAAGATGTGTGCACTGTTGTCGGGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 4:273034/142‑1 (MQ=255) aCAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc > 5:312908/1‑149 (MQ=255) aCAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcg < 3:107168/148‑1 (MQ=255) cAGAGGTGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgcg > 6:287013/1‑149 (MQ=255) tGCCGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTGCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGcg > 3:25210/1‑148 (MQ=255) ccGGG‑CT‑CTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCGCGAGGAACTTGCGCAAGAACTGCCGCGTACGctct > 2:199492/1‑149 (MQ=255) ggtct‑ctTCGCGTG‑T‑AACCCCGCTCCTACACACATGCCTCAAGATCTTTCCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc < 3:108564/146‑1 (MQ=39) gcgGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgcgc > 4:148156/1‑149 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCC‑GGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGG‑CT‑CTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGC > NC_002947/278595‑278884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |