| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.040) | 36 (0.690) +GCC |
32/278 | 0.9 | 94.8% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.040) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCG‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCT > NC_002947/5555462‑5555753 | gCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgc > 6:135035‑M1/1‑147 (MQ=255) aaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgt < 1:219513‑M1/149‑20 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgt < 2:121448‑M1/149‑22 (MQ=255) aGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtat < 5:126696‑M1/148‑24 (MQ=255) cTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaac < 2:45163‑M1/149‑33 (MQ=255) ggCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctg > 3:182276‑M1/1‑114 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctgg < 8:54587‑M1/149‑37 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggg < 3:132675‑M1/149‑38 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttcc > 1:290370‑M1/1‑112 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttcc < 2:290370‑M1/127‑16 (MQ=255) cAGCGATTAGGCGGGCGGACATGAGCAACTCCTTTTGTCATGGGTCGCCTAAAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGCCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggg < 8:104666‑M1/149‑38 (MQ=255) aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCCT‑‑‑AGCGggcccggcaatttacgcgggtatggaacaaacctgggg > 6:309210‑M1/1‑111 (MQ=255) gatatgtcggtcggacatGAGCAACTCCTTTTGTCATGTGTCGCGGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgggtgtatgcaacaaacctggggctg < 5:323896‑M1/144‑42 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCTTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctat < 4:182276‑M1/148‑46 (MQ=255) gCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcc < 5:135035‑M1/149‑52 (MQ=255) gACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaaccaggggctgctatgcagcccgt > 6:307960‑M1/1‑95 (MQ=255) attGACCAACTCCTTTTGTCTGGTGTCGCCTACTGCATAGCAACACGGCTATGGTGTGGGTGCGGCCTTGTGGCGCTAACGGGCCGAATCGGGGCC‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGccccagg < 2:279356/147‑5 (MQ=255) aTGAGCAACTCCTTTTGGCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGGGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatacagccctttcg < 8:72980‑M1/149‑58 (MQ=255) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCCCAT‑‑‑ATCGgccccggcaatttaagcgtgtattcaacaaaccaggggctgctattcagcccattagcgacacaaagcc > 4:82492‑M1/1‑80 (MQ=255) ttGTCATGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcc < 5:309210‑M1/147‑70 (MQ=255) gtgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAA‑‑‑AGCGgccccggcaatttacgcgggtatgcaacaaacctggggctgctattcagccctttagcgacaccacgcccccaaacga > 6:228450‑M1/1‑71 (MQ=255) cGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgca < 3:82492‑M1/149‑86 (MQ=255) aCAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcagg < 1:116682‑M1/149‑88 (MQ=255) cAGCATAGCAACTGCGGTGAGGTGTGGGAGCGGCGTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggc < 2:109439‑M1/149‑89 (MQ=255) gCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcagg < 5:228450‑M1/148‑95 (MQ=255) gtgtGGGAGCGGCCATGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaaccaggggctgcaatgcagccctttcgcgccacaaggcccacaaaggaccgcgcaggcttcacgcccggaactgtgcac > 3:200148‑M1/1‑40 (MQ=255) gtgGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccgg < 5:144508‑M1/137‑100 (MQ=255) ccTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcg > 4:76636‑M1/1‑28 (MQ=255) gtCGCGAAAGGGCCGCAT‑‑‑AGCGGCCCAGGCAATTTCCGCGTGTATGCAACAAAACTGGGGCTGCTATGCAGCCCTTTCTCGACACAATGCCCACAAAGGACCGCGCAgc > 4:65054/1‑108 (MQ=255) gtCGAGAATGGGCGGCAT‑‑‑AGGGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcccgttcgcgacagaaggcccacaaaggaccgcgcagg < 3:65054‑M1/109‑88 (MQ=255) cgacatcgggccgcct‑‑‑cCCGgccccgccaatttccgcgtgtttgcaacaaccctggggctgctctgccgccgttccgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagcc < 5:206731‑M1/142‑130 (MQ=255) cgAAAGGGCCGCAT‑‑‑ACCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccga > 2:43111‑M1/1‑18 (MQ=255) ccggggccgCTA‑‑‑TGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagcagagccga > 8:213375‑M1/4‑16 (MQ=255) gCCGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatc > 6:264523‑M1/1‑11 (MQ=255) cGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccgtttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc < 6:36142‑M1/149‑141 (MQ=255) cGCAT‑‑‑AGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc < 2:284398‑M1/149‑141 (MQ=255) cGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagc > 2:31301‑M1/1‑2 (MQ=255) cGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagc < 1:31301‑M1/130‑129 (MQ=255) ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttctggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcacct > 6:26881‑M1/1‑1 (MQ=255) | GCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAT‑‑‑AGCG‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCT > NC_002947/5555462‑5555753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |