| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2301453 = | 0 (0.000) | 54 (1.040) | 31/278 | 1.0 | 100% | intergenic (‑97/‑234) | sbcD/PP_5497 | exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein |
| ? | NC_002947 | 2925429 = | NA (NA) | intergenic (‑177/+388) | PP_2563/PP_2564 | antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase | |||||
TGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATG > NC_002947/2925288‑2925564 | tggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGCGTTAGCGGTTGTTCCATGGGAGATCACCCa > 1:211036/1‑149 (MQ=255) gTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCACCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCa < 1:245005/148‑1 (MQ=255) gTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCa < 8:197951/147‑1 (MQ=255) tAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGTGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGcc > 7:56734/1‑149 (MQ=255) caACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTcc < 1:282629/149‑1 (MQ=255) gCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCggg > 4:212428/1‑148 (MQ=255) gCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCggg < 3:212428/148‑1 (MQ=255) gTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTgcg > 2:60220/1‑149 (MQ=255) gTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTgc < 2:19/148‑1 (MQ=255) gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGcaca < 5:238697/149‑1 (MQ=255) tgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAg > 1:2346/1‑148 (MQ=255) tgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAg > 3:206952/1‑148 (MQ=255) tGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTGGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTg < 6:114299/132‑1 (MQ=255) tGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTGGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTg > 5:114299/1‑132 (MQ=255) tGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCaaa < 7:216700/149‑1 (MQ=255) cAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGAt < 4:206952/149‑1 (MQ=255) aaTATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATg > 7:3588/1‑149 (MQ=255) aaTATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTCCTAACC‑CGACGGGTTAGCGGTTGTTACATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATg > 4:69309/1‑149 (MQ=255) tGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATgcgctt < 1:173032/148‑3 (MQ=255) ggCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTACATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGt > 6:295415/1‑149 (MQ=255) gATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCAc > 8:99811/1‑149 (MQ=255) aTAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTgc > 1:124271/1‑104 (MQ=255) aTAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTgc < 2:124271/104‑1 (MQ=255) gcagggCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGa < 5:290250/145‑1 (MQ=255) gggCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACCGCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCATTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACAt > 1:228075/1‑149 (MQ=255) ggCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCg < 5:199216/149‑1 (MQ=255) gTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACAt < 7:23118/142‑1 (MQ=255) gTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACAt > 8:23118/1‑142 (MQ=255) gTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATc > 7:96716/1‑149 (MQ=255) ccAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATc > 3:131944/1‑147 (MQ=255) gggCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaa < 8:56734/149‑1 (MQ=255) aGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTACGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGCCGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTc > 6:64924/1‑149 (MQ=255) gCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGa > 7:5991/1‑149 (MQ=255) c‑cccATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACt > 3:265179/1‑149 (MQ=255) cccATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACt > 3:125992/1‑148 (MQ=255) ccATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGa > 6:79872/1‑149 (MQ=255) aTAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCgag > 8:275207/1‑122 (MQ=255) aTAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCgag < 7:275207/122‑1 (MQ=255) aaaCCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCgg < 2:228075/149‑1 (MQ=255) atAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCAAACAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGAATGACGTCAGATCTGCACTGACATCGATATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGt > 8:81713/2‑147 (MQ=255) tAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAg > 3:257696/1‑149 (MQ=255) aaCC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgc > 3:249186/1‑149 (MQ=255) aaCC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgc > 2:208164/1‑149 (MQ=255) c‑cGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgccgc < 8:3588/149‑1 (MQ=255) cGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCATTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgccgcc > 6:257991/1‑149 (MQ=255) gggTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGaa > 8:224855/1‑148 (MQ=255) gggTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCAGGGTAGGTCAGCCGCCGaa > 6:36859/1‑148 (MQ=255) ttAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACt > 3:205241/1‑149 (MQ=255) gCGGTTGTTCCATGGGAGATCACCCATCCCTTCCTGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTg < 5:166417/149‑1 (MQ=255) gCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTg < 8:96716/149‑1 (MQ=40) cGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGAt < 4:286775/96‑1 (MQ=255) cGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGAt > 3:286775/1‑96 (MQ=255) ggTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGc > 6:19230/1‑148 (MQ=38) ggTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGc > 3:75070/1‑148 (MQ=38) gttgttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTa < 3:50325/149‑1 (MQ=38) ttgttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTAt < 4:131944/149‑1 (MQ=37) gttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACTGCAAACAGGATGCGCATTACGTCAGATCTGCACTGACATCGATATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATg < 2:211036/148‑1 (MQ=255) cATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGAt < 3:142299/87‑1 (MQ=35) cATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGAt > 4:142299/1‑87 (MQ=35) | TGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCC‑CCCATAAAACCCTGCTAACC‑CGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATG > NC_002947/2925288‑2925564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |