| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3947913 = | 27 (0.510) | 7 (0.160) | 6/228 | 5.2 | 25.6% | coding (136/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947 | 3947998 = | 19 (0.450) | coding (51/1797 nt) | PP_3483 | type II secretion system protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGT > NC_002947/3947858‑3948137 | tGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACAACACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACCTCGGTg > 8:278132/1‑148 (MQ=255) aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATACTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCCGTGCAgg > 2:88638/1‑149 (MQ=255) gaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTGCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGGGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg < 3:30169/148‑1 (MQ=255) ggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCGCCCACAGGTTCATCACAGGTATGTGGGGTGCATACATGCTGTGGGAGCGGGCCT‑GGCCGCGAAGACCTCGGTGCAGGCGTTGCAGATTGCGGGGTTGGATCGAAt > 4:163422/1‑149 (MQ=255) gtaaaTTTTTGGTGGGTTCTTCGGGGGCATGCCCGCTCCCACAGGTACATCACCGGTCTGTGGGCTGAATACATCCTGTGGGCGGGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTg < 2:27579/147‑1 (MQ=39) ggCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATTCATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAggg > 1:222997/1‑149 (MQ=255) gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATCGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGa < 1:198120/94‑1 (MQ=255) gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGa > 2:198120/1‑93 (MQ=255) gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGcgcg > 7:247466/1‑149 (MQ=255) ccACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAg < 5:57038/147‑1 (MQ=255) gTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTc > 5:118614/1‑149 (MQ=255) tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg > 3:73794/1‑79 (MQ=255) tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg < 4:73794/79‑1 (MQ=255) caGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg > 4:140070/1‑149 (MQ=255) gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGAAGGCTTTGCAGATTACGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTg > 1:243039/1‑149 (MQ=255) tgtgGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGc < 2:128851/147‑1 (MQ=255) tgtgGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGc > 1:128851/1‑147 (MQ=255) ggCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgcgc < 3:42310/149‑1 (MQ=255) taccTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTccc < 1:43141/147‑1 (MQ=255) aTCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTccc > 2:37950/1‑149 (MQ=255) tgGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgt < 1:139461/147‑1 (MQ=255) gAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAg > 2:297593/1‑147 (MQ=255) aGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAg < 1:297593/149‑1 (MQ=255) cGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGtt > 3:40472/1‑149 (MQ=255) cAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtc < 4:88295/149‑1 (MQ=255) ccGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgtcgt > 6:223754/1‑149 (MQ=255) cgcgAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg > 7:194839/1‑79 (MQ=255) cgcgAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg < 8:194839/79‑1 (MQ=255) | TGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT‑GCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGT > NC_002947/3947858‑3948137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |