| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,787,907 | Δ1 bp | 100% | coding (728/1392 nt) | PP_3350 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,787,907 | 0 | T | . | 100.0% | 82.6 / NA | 19 | coding (728/1392 nt) | PP_3350 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (10/9); total (10/9) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAG > NC_002947/3787789‑3788049 | gtccagtGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCg > 5:123426/1‑147 (MQ=255) cTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCg > 2:101281/1‑147 (MQ=255) cggcCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTg < 5:7987/149‑1 (MQ=255) gCCGAAAGTGTAGCGCTGCTCGTCACCCGGACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTtgctgc > 1:20865/1‑149 (MQ=255) gAAAGTGTAGCGCTGCTCGTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTCGGGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCAt > 1:94207/1‑149 (MQ=255) gTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCAcc > 4:251692/1‑149 (MQ=255) gTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCAcc > 6:278043/1‑149 (MQ=255) tCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCg < 6:123426/149‑1 (MQ=255) aCCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGt < 2:20865/149‑1 (MQ=255) c‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGttt > 6:335949/1‑148 (MQ=255) gACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGTTTTc < 5:278043/149‑1 (MQ=255) gCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAtgttgtt > 7:240503/1‑107 (MQ=255) gCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAtgttgtt < 8:240503/107‑1 (MQ=255) cGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGTTTTCAGCGGgc < 2:94207/149‑1 (MQ=255) ccAGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTg < 5:335949/148‑1 (MQ=255) aGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAtgttg < 3:114940/77‑1 (MQ=255) aGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAtgttg > 4:114940/1‑77 (MQ=255) aGGCCAAAGGCTAGCAGGTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGcgt < 1:101281/149‑1 (MQ=255) gTCCATG‑TCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCttgaggttgag > 6:163144/1‑149 (MQ=255) | GTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCC‑GACTCGCCGGCCAGGGTGCGGTCGTC‑GGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAG > NC_002947/3787789‑3788049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |