| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,420,598 | Δ1 bp | 5.7% | intergenic (+81/+26) | ctpH → / ← PP_t62 | methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,420,598 | 0 | A | . | 5.7% | 332.6 / 13.2 | 106 | intergenic (+81/+26) | ctpH/PP_t62 | methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro |
| Reads supporting (aligned to +/- strand): ref base A (54/46); new base . (2/4); total (56/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.65e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
AGGCGGGGCAGCGCCTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCGCAAGCCCTTG > NC_002947/2420450‑2420745 | aGGCGGGGCAGCGCCTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAATCCGCGCACTGACGTATTTTTCGCACAACACACAAAGCCCGca > 7:146400/1‑149 (MQ=255) ggCAGCGCCTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑Gc > 4:14320/1‑149 (MQ=255) cAGCGCCGGCATGGTTTGTCAGGGCAGTTGGGCGAAGGCACCTCCCGCCGGAGTGCCTGACTCGGGCGGCAGGAGTTGCAG‑GTGCCATACAGGCTGAAGCCGCGCACTGACGTATTTTTCCCACACACCACAAACCCCCCACATG‑GCgg < 2:63090/149‑1 (MQ=255) aGCGCCTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCggg < 3:14320/149‑1 (MQ=255) cgcCTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGC‑CATGTGCGGGCt < 8:286521/149‑1 (MQ=255) ccTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCttt < 1:336698/149‑1 (MQ=255) ccTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGC‑CATGTGCGGGCttt < 2:182754/149‑1 (MQ=255) cTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTtg < 3:204552/149‑1 (MQ=255) cATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGC‑CATGTGCGGGCTTtgt < 7:338671/147‑1 (MQ=255) gTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGAtt > 7:167706/1‑149 (MQ=255) aGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTgg > 6:368383/1‑149 (MQ=255) gCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATg > 3:203728/1‑122 (MQ=255) gCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCg < 8:205239/149‑1 (MQ=255) gCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAGTGTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGgagaga > 1:268426/1‑148 (MQ=255) gCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGgagaga > 6:318535/1‑147 (MQ=255) gCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACa < 2:268189/149‑1 (MQ=255) aGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACaa < 5:158174/126‑1 (MQ=255) aGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACaa > 6:158174/1‑126 (MQ=255) tCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTc < 1:166757/149‑1 (MQ=255) aCCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCg > 8:18291/1‑148 (MQ=255) aCCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGC‑CATGTGCGGGCTTtgtg > 5:108530/1‑118 (MQ=255) aCCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGC‑CATGTGCGGGCTTtgtg < 6:108530/118‑1 (MQ=255) ccGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTg > 1:185067/1‑149 (MQ=255) ccGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTg < 8:69050/149‑1 (MQ=255) tGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCt < 1:104336/143‑1 (MQ=255) tGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCt > 2:104336/1‑143 (MQ=255) tGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGcc > 1:211223/1‑149 (MQ=255) aGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGcc < 2:268426/147‑1 (MQ=255) tGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTtct > 4:169299/1‑149 (MQ=255) ccTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTtctc < 7:18291/148‑1 (MQ=255) cTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACa > 5:194723/1‑104 (MQ=255) cTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACa < 6:194723/104‑1 (MQ=255) tGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGtt > 3:129367/1‑148 (MQ=255) tCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCg > 3:50223/1‑148 (MQ=255) ggTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAAc > 7:272759/1‑149 (MQ=255) tCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACga > 8:61217/1‑149 (MQ=255) tCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACga > 6:54566/1‑149 (MQ=255) tGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCgg < 4:66901/129‑1 (MQ=255) tGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCgg > 3:66901/1‑129 (MQ=255) gCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGAc > 8:8261/1‑149 (MQ=255) aGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTTCGGGACgagaagg < 4:129367/149‑4 (MQ=255) aGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCt < 4:50223/149‑1 (MQ=255) cAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTg > 6:109184/1‑149 (MQ=255) cAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTg > 2:286033/1‑149 (MQ=255) gCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACaa < 1:127119/78‑1 (MQ=255) gCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACaa > 2:127119/1‑78 (MQ=255) ccATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTgcg > 6:15778/1‑149 (MQ=255) cATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTgcgc < 7:80207/149‑1 (MQ=255) aTAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTgcgc > 5:184245/1‑148 (MQ=255) aTAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTgcgc > 2:341697/1‑148 (MQ=255) agGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGAcgc > 8:128126/1‑129 (MQ=255) agGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGAcgc < 7:128126/129‑1 (MQ=255) ggCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTTCGGGACgagaag < 3:344564/127‑3 (MQ=255) ggCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTTCGGGACgagaag > 4:344564/1‑125 (MQ=255) gCTGAAGCCGCGCTCTGACGTATTTTTCGCACACAACACAAACCAAGCACATG‑GCGTGCTTTGTGACAAGGATTTGTTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTc < 6:239710/149‑1 (MQ=255) gCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTgg > 5:15078/1‑136 (MQ=255) gCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTc > 3:140641/1‑149 (MQ=255) gCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGCATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTgg < 6:15078/136‑1 (MQ=255) gAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAg < 3:137279/86‑1 (MQ=255) gAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAg > 4:137279/1‑86 (MQ=255) aaGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCg < 5:109184/147‑1 (MQ=255) aaGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCg < 4:140641/147‑1 (MQ=255) aaGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGa < 7:8261/148‑1 (MQ=255) aaGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGAt < 5:15778/149‑1 (MQ=255) aGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCGTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATg < 5:297603/149‑1 (MQ=255) gCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATg > 3:264049/1‑148 (MQ=255) ccGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCTCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGTATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATgta < 2:185067/149‑3 (MQ=255) gcgcACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGAt < 2:257414/144‑1 (MQ=255) gcgcACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGAt > 1:257414/1‑144 (MQ=255) gcgcACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAAc > 2:136702/1‑148 (MQ=255) cgcACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGAc < 4:197134/115‑1 (MQ=255) cACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGACAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACaaaa < 5:368383/149‑1 (MQ=255) aCTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAAt > 6:185789/1‑149 (MQ=255) tGACGTATTTTTCGCACACAACACAAAGGCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGAt < 1:120069/138‑1 (MQ=255) tGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTggg < 8:181008/126‑3 (MQ=255) tGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTgcg > 7:181008/1‑126 (MQ=255) tGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGAt > 2:120069/1‑138 (MQ=255) aCGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACgag < 6:125300/106‑1 (MQ=255) aCGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACgag > 5:125300/1‑106 (MQ=255) aCGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTa < 2:211223/149‑1 (MQ=255) aCGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTa > 1:136088/1‑149 (MQ=255) tttCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATc > 8:187935/1‑149 (MQ=255) cacacaACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGtt < 8:272759/149‑1 (MQ=255) acacaacacaAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGttt > 2:195445/1‑149 (MQ=255) acacaacacaAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGttt > 4:329724/1‑149 (MQ=255) acacaacacaAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGttt < 1:195445/149‑1 (MQ=255) cacaacacaaAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGtttt < 7:187935/149‑1 (MQ=255) acaacacaaAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGttttt > 5:158435/1‑149 (MQ=255) aacacaaAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGc > 1:190451/1‑149 (MQ=255) acaaAGCCCGC‑CATGTGCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCg > 2:244336/1‑149 (MQ=255) caaAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCg > 8:34625/1‑148 (MQ=255) aaaGCCCGCACTTG‑GCGGGCTTTGTGACAAGGATTTGGTCTGAGAGACAGGTTTCTAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCGGATGATCAAAATCCTACTGCATc < 2:258927/134‑1 (MQ=255) aaaGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTa > 2:283671/1‑127 (MQ=255) aaaGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTa < 1:283671/127‑1 (MQ=255) aaaGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCGc > 2:12249/1‑148 (MQ=255) aaaGCCCGCACATG‑GCGGGCTTTGTGACAAGCATTAGGTCGGAGAGTCAGCATACGAACCTGCGGCCTACTCGTCACTAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATc > 1:258927/1‑134 (MQ=255) aaGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCGCaa < 1:12249/149‑1 (MQ=255) aGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGCAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCGCAAg < 8:167706/149‑1 (MQ=255) cccGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCGCAAGcc < 6:158435/149‑1 (MQ=255) cacaTG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCGCAAGCCCttg < 2:190451/149‑1 (MQ=255) | AGGCGGGGCAGCGCCTGCATGGTTTGTCAGGGCAGTTGGGCGAAGTCACCTCCCGCCTGAGTGCCTGACTCGGTCTGCAGGAGTTGCAG‑GTGCCATAGAGGCTGAAGCCGCGCACTGACGTATTTTTCGCACACAACACAAAGCCCGCACATG‑GCGGGCTTTGTGACAAGGATTTGGTCGGAGAGACAGGATTCGAACCTGCGGCCTTCTCGTCCCGAACGAGACGCGCTACCTGGCTGCGCTACACTCCGATGAACAAAATCCTACTGCATCCCGTTTTTGCTCGCAAGCCCTTG > NC_002947/2420450‑2420745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |