| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 460804 | 68 (1.230) | 4 (0.080) | 4/244 | NT | 6.0% | coding (1661/2301 nt) | pqqF | coenzyme PQQ synthesis protein F |
| ? | NC_002947 | = 460835 | 61 (1.160) | coding (1630/2301 nt) | pqqF | coenzyme PQQ synthesis protein F | |||||
ATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/460668‑460804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgTGGCTGCACACCGAGTGGCATGGCATGGCCGCAGGCTTCGAGGATACCGCGCTAAAGGCCTTGGGCGCTGCGCTGGAACAGTGCCCTGGGCAAGGCTCGCGACCTAGCCCCCTGCCAACCTGGGCAAACCACCGCTGGCAGCAT < NC_002947/460835‑460692 ATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCTGTATCCTCGAA < 5:169698/132‑1ATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAA > 6:169698/1‑132 GCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGTGGCTGCACACCGAGTGGCATGGCATGGCCGCAG > 3:72922/1‑149 CTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGTGGCTGCACACCGAGTGGCATGGCATGGCCGCAGGCTT < 4:72922/148‑1 CCAGGTTGGCAGGGGGCTAGGTCGCGAACCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGTGGCTGCACACCGAGTGGCATGGCATGGCCGCAGGCTTC > 3:317339/1‑131 CCAGGTTGGCAGGGGGCTAGGTCGCGAACCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGTGGCTGCACACCGAGTGGCATGGCATGGCCGCAGGCTTC < 4:317339/131‑1 GCCTGTGGCTGCACACCGAGTGGCATGGCATGGCCGCAGGCTTCGAGGATACCGCGCTAAAGGCCTTGGGCGCTGCGCTGGAACAGTGCCCTGGGCAAGGCTCGCGACCTAGCCCCCTGCCAACCTGGGCAAACCACCGCTGGCAGCAT < 6:240311/149‑1 ATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/460668‑460804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgTGGCTGCACACCGAGTGGCATGGCATGGCCGCAGGCTTCGAGGATACCGCGCTAAAGGCCTTGGGCGCTGCGCTGGAACAGTGCCCTGGGCAAGGCTCGCGACCTAGCCCCCTGCCAACCTGGGCAAACCACCGCTGGCAGCAT < NC_002947/460835‑460692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |