New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	472278 =	62 (1.120)	4 (0.080)	4/244	NT	6.4%	coding (657/1851 nt)	rpoD	RNA polymerase sigma 70 factor
	?	NC_002947	472320 =	58 (1.100)					coding (615/1851 nt)	rpoD	RNA polymerase sigma 70 factor

CTGACGACAACATTGCCGCGCCAACCGAAGAAGTGCCGATCCCAGGTGCCAAGGCCGCTGCGGCGAAGGAAGAGTCCGACGACGACGAAGAAGAATCCGAAAGCGGTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/472426‑472278 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgtcACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGCACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAATGTTGTCGTCAGGGTCGATGTAACC  >  NC_002947/472320‑472439                                                                                                                                                                                                                                                                               CTGACGACAACATTGCCGCGCCAACCGAAGAAGTGCCGATCCCAGGTGCCAAGGCCGCTGCGGCGAAGGAAGAGTCCGACGACGACGAAGAAGAATCCGAAAGCGGTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGGTCGTC                                                                                                                          <  4:51876/149‑1                     CCAACCGAAGAAGTGCCGATCCCAGGTGCCAAGGCCGCTGCGGCGAAGGAAGAGTCCGACGACGACGAAGAAGAATCCGAAAGCGGTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGG                                                                                                                               <  7:122134/124‑1                     CCAACCGAAGAAGTGCCGATCCCAGGTGCCAAGGCCGCTGCGGCGAAGGAAGAGTCCGACGACGACGAAGAAGAATCCGAAAGCGGTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGG                                                                                                                               >  8:122134/1‑124                                                                                                TCCGAAAGCGGTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGGTCGTCACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGCACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAA                           >  1:92511/1‑149                                                                                                         GGTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGGTCGTCACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGCACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAATGTTGTCGT                  >  1:155488/1‑149                                                                                                          GTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGGTCGTCACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGCACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAATGTTGTCGTC                 <  2:155488/149‑1                                                                                                                       AGAGGCCGAGAGCGGCCCGGATCCGGTCGTCACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGCACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAATGTTGTCGTCAGGGTCGATGTAA    <  2:92511/149‑1                                                                                                                                                GTCGTCACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGGACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAATGTTGTCGTCAGGGTCGATGTAACC  <  6:190215/126‑1                                                                                                                                                GTCGTCACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGCACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAATGTTGTCGTCAGGGTCGATGTAACC  >  5:190215/1‑126                                                                                                                                                                                                                                                                               CTGACGACAACATTGCCGCGCCAACCGAAGAAGTGCCGATCCCAGGTGCCAAGGCCGCTGCGGCGAAGGAAGAGTCCGACGACGACGAAGAAGAATCCGAAAGCGGTGACGACGAGGAAGAGGCCGAGAGCGGCCCGGATCCGGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/472426‑472278 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgtcACCGCTTTCGGATTCTTCTTCGTCGTCGTCGGACTCTTCCTTCGCCGCAGCGGCCTTGGCACCTGGGATCGGCACTTCTTCGGTTGGCGCGGCAATGTTGTCGTCAGGGTCGATGTAACC  >  NC_002947/472320‑472439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.