New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1748797 =	53 (0.960)	6 (0.110)	4/242	NT	10.2%	intergenic (‑130/‑202)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	1748838 =	56 (1.070)					intergenic (‑171/‑161)	PP_1548/PP_5744	hypothetical protein/hypothetical protein

ACAAGCGTGCTTGCATTTAAAAAACAAGCATGCTTTTATAAATGCAAGTTCGCTTGCATTTGCATCGAGCTGGCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1748951‑1748797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtggCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAATGCAAGCACGCTTGTGTAAT  >  NC_002947/1748838‑1748956                                                                                                                                                                                                                                                                                    ACAAGCGTGCTTGCATTTAAAAAACAAGCATGCTTTTATAAATGCAAGTTCGCTTGCATTTGCATCGAGCTGGCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTC                                                                                                                               >  7:59528/1‑149                                        AAATGCAAGTTCGCTTGCATTTGCATCGAGCTGGCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTG                                                                                                                             <  1:354718/112‑1                                        AAATGCAAGTTCGCTTGCATTTGCATCGAGCTGGCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTG                                                                                                                             >  2:354718/1‑112                                                                                                            AGATGAGCCCCCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAAT                     >  8:319277/1‑148                                                                                                                GAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAA                      >  3:150121/1‑143                                                                                                                GAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAA                      <  4:150121/143‑1                                                                                                                GAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAA                      >  5:23782/1‑143                                                                                                                GAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAA                      <  6:23782/143‑1                                                                                                                              CGAGTTAATCCGGCGATTGAGTTCTGGTGGCTCATCTGCTGGTTTTTAATGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAATGCAAGCACGCTTGTGTAAT  <  7:319277/149‑1                                                                                                                                                                                                                                                                                    ACAAGCGTGCTTGCATTTAAAAAACAAGCATGCTTTTATAAATGCAAGTTCGCTTGCATTTGCATCGAGCTGGCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1748951‑1748797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtggCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGCCAGCTCGATGCAAATGCAAGCGAACTTGCATTTATAAAAGCATGCTTGTTTTTTAAATGCAAGCACGCTTGTGTAAT  >  NC_002947/1748838‑1748956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.