New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2412856 | 109 (1.970) | 8 (0.150) | 5/240 | NT | 8.0% | intergenic (+120/‑301) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
? | NC_002947 | = 2412933 | 83 (1.600) | intergenic (+197/‑224) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
TGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2412701‑2412856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcttgcTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACA < NC_002947/2412933‑2412786 TGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAG < 3:284986/149‑1 GCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGG > 6:146217/1‑149 CCACCTGCGGCGGCTCGATTTGAAGCAACGCTGAGCCCAGCACCTCGTTCTCCATCTGCGACTGCGTCTGCATCTGCTTATGCTGTTGCTTCTAAGCTGGCGATAGTAAAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGG > 5:157026/1‑149 ACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCT > 4:231251/1‑149 CTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAG > 6:341934/1‑134 CTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAG < 5:341934/134‑1 TCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAG > 3:272634/1‑133 TCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAG < 4:272634/133‑1 CCAGCACGTCGTTCTTCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCC < 5:286469/148‑1 TTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCAC < 1:318808/145‑1 TTTTGCTTTTGCTTCTAAGTGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCAC > 2:318808/1‑145 TTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCAC < 6:192326/138‑1 TTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCAC > 5:192326/1‑138 TTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGC‑GGAGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATC > 4:250289/1‑121 AGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTAC < 2:325956/148‑1 AGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTAC < 2:321253/148‑1 cgatCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGC < 7:133089/145‑1 CTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCT > 8:270245/1‑105 CTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCT < 7:270245/105‑1 TTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGC > 2:242875/1‑148 CTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACA < 1:354212/149‑1 TGCCACCTGCGGCGGCTCGATTTGAAGCCACGCTGAGGCCAGCACGTCGTTCTGCTTCTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2412701‑2412856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcttgcTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACA < NC_002947/2412933‑2412786 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |