New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2436611 =	106 (1.910)	9 (0.180)	8/236	NT	8.4%	intergenic (+189/‑470)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	2436666 =	98 (1.920)					intergenic (+244/‑415)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase

ATTGCTTTGCGCTTGCGCGAAGAGCCAAGGCGACTACACTGGCACTTGCTTGAATGAATAACCCGGCCTGCCTGGCCTTTTCTGCGCAGCAGAACGCAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2436761‑2436611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctttg‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACTGT  >  NC_002947/2436666‑2436811                                                                                                                                                                                                                                                                                                            ATTGCTTTGCGCTTGCGCGAAGAGCCAAGGCGACTACACTGGCACTTGCTTGAATGAATAACCCGGCCTGCCTGGCCTTTTCTGCGCAGCAGAACGCAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCT                                                                                                                                                        <  3:344542/148‑1                           AAGGCGACTACACTGGCACTTGCTTGAATGAATAACCCGGCCTGCCTGGCCTTTTCTGCGCAGCAGAACGCAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTT                                                                                                                                                       >  6:33687/1‑123                           AAGGCGACTACACTGGCACTTGCTTGAATGAATAACCCGGCCTGCCTGGCCTTTTCTGCGCAGCAGAACGCAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTT                                                                                                                                                       <  5:33687/123‑1                                                                                          CAGAACGCAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTT                                                                                                               <  3:232286/100‑1                                                                                          CAGAACGCAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTT                                                                                                               >  4:232286/1‑100                                                                                                  AAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAA                                                     >  6:50256/1‑149                                                                                                      CGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAG                                                 >  8:145780/1‑149                                                                                                      CGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAG                                                 >  2:341277/1‑149                                                                                                        GCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCC                                               >  5:107198/1‑149                                                                                                               GGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAA                                                                <  1:24341/125‑1                                                                                                               GGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAA                                                                >  2:24341/1‑125                                                                                                                                      TGCCGAGCCGCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAAT                  <  1:341277/148‑1                                                                                                                                               GCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTG                                       <  7:278629/118‑1                                                                                                                                               GCCGCTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTG                                       >  8:278629/1‑118                                                                                                                                                   CTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACT    <  2:122344/149‑1                                                                                                                                                   CTTTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACT    <  8:319281/149‑1                                                                                                                                                     TTG‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACTGT  >  1:177845/1‑149                                                                                                                                                                                                                                                                                                            ATTGCTTTGCGCTTGCGCGAAGAGCCAAGGCGACTACACTGGCACTTGCTTGAATGAATAACCCGGCCTGCCTGGCCTTTTCTGCGCAGCAGAACGCAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2436761‑2436611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctttg‑CGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACTGT  >  NC_002947/2436666‑2436811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.