New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3217292 =	65 (1.170)	4 (0.080)	3/244	NT	6.5%	coding (82/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3217326 =	53 (1.000)					coding (116/1407 nt)	oprJ	outer membrane protein OprJ

TCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGACGATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217445‑3217292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCCGTG  >  NC_002947/3217326‑3217472                                                                                                                                                                                                                                                                                                               TCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGACGATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCG                                                                                                                                                          <  4:321404/149‑1     GCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGACGATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGG                                                                                                                                                        <  7:26350/147‑1                                                                                                                       ATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACCACCACCGCTCCTTG                                    >  4:334986/1‑149                                                                                                                       ATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTG                                    >  5:196745/1‑149                                                                                                                          GCCCCATTCGGCCGCCACCGGCGCTTCGGGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTC                                                                          >  3:209317/1‑108                                                                                                                          GCCCCATTCGGCCGCCACCGGCGCTTCGGGGCGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTC                                                                          <  4:209317/108‑1                                                                                                                                                         CGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCCGTG  >  3:217701/1‑149                                                                                                                                                         CGATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCCGTG  <  4:307500/149‑1                                                                                                                                                                                                                                                                                                               TCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCAGCTGACGCAGCACTGGGTCGACGATGAATGCCTGCCAGTCCAACTGCTCCACCGAGTGGCCAGTATGGCCGGCTGCATCGCCCCATTCGGCCGCCACCGGCGCTTCGGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217445‑3217292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgATGCAGCCGGCCATACTGGCCACTCGGTGGAGCAGTTGGACTGGCAGGCATTCATCGTCGACCCAGTGCTGCGTCAGCTGGTCGGTACCGCGCTGGACAACAACCGCTCCTTGCGCCAGACCCTGCTCGACATCGAGCAGGCCCGTG  >  NC_002947/3217326‑3217472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.