New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3217683	45 (0.810)	3 (0.060)	3/244	NT	6.1%	coding (473/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	= 3217733	49 (0.930)					coding (523/1407 nt)	oprJ	outer membrane protein OprJ

GTAATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGATGGCCGCGAGGGTGTCAGCAGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3217530‑3217683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGCCAGGTACTGCTCCAGGGCCGCATCGCTCAGGCTTTTGACGCGGCCGAACAGGTCCACTTCGTATTCCGGCAGCGACAAGCCCACCTGATAGGTG  <  NC_002947/3217733‑3217588                                                                                                                                                                                                                                                                                                              GTAATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGATGGCCGCGAGGGTGTCAGCAGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTAC                                                                                                                                                         >  7:116149/1‑149    ATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGATGGCCGCGAGGGTGTCAGCAGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTG                                                                                                                                                      <  5:52643/149‑1                                                         AGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTGG                                                                                                                                                     <  1:28299/97‑1                                                         AGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTGG                                                                                                                                                     >  2:28299/1‑97                                                          GCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTGGCTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGC                                                                                                <  8:65960/149‑1                                                                                             GAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTGGCTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGCC                                                                                               <  5:113205/115‑1                                                                                             GAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTGGCTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGCC                                                                                               >  6:113205/1‑115                                                                                                                                                     CCTGGCTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGCCAGGTACTGCTCCAGGGCCGCATCGCTCAGGCTTTTGACGCGGCCGAACAGGTCCACTTCGTATTCCGGCAGCGACAAGCCCACCTGATAG     <  3:100624/149‑1                                                                                                                                                     CCTGGCTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGCCAGGTACTGCTCCAGGGCCGCATCGCTCAGGCTTTTGACGCGGCCGAACAGGTCCACTTCGTATTCCGGCAGCGACAAGCCCACCTGATAG     <  4:306680/149‑1                                                                                                                                                         GCTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGCCAGGTACTGCTCCAGGGCCGCATCGCTCAGGCTTTTGACGCGGCCGAACAGGTCCACTTCGTATTCCGGCAGCGACAAGCCCACCTGATAGGTG  <  6:227438/148‑1                                                                                                                                                                                                                                                                                                              GTAATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGATGGCCGCGAGGGTGTCAGCAGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGTCAAAAGCCTGAGCGATGCGGCCCTGGAGCAGTACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3217530‑3217683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcTCACCTCGGCGATCAGGGCGATGCGTGCGGCACGCCCGACTTCCTCGGTGGCCAGGTACTGCTCCAGGGCCGCATCGCTCAGGCTTTTGACGCGGCCGAACAGGTCCACTTCGTATTCCGGCAGCGACAAGCCCACCTGATAGGTG  <  NC_002947/3217733‑3217588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.