| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3318503 | 55 (0.990) | 4 (0.070) | 4/248 | NT | 6.9% | coding (534/2067 nt) | treSA | trehalose synthase A |
| ? | NC_002947 | = 3318537 | 54 (1.010) | coding (500/2067 nt) | treSA | trehalose synthase A | |||||
GCAGCAGATTGACCGCATCGCGCCCGGCGGGCACCTCGGGCAGCAGCGCCCAGTCTTCTTCGCGGATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3318433‑3318503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCGAGATCCGCGAAGAAGACTGGGCGCTGCTGCCCGAGGTGCCCGCCGGGCGCGATGCGGTCAATCTGCTGCCAGCTCAGTGTGACGAGCTGAAGGCGCGCCATTACATCGTTG < NC_002947/3318537‑3318391 GCAGCAGATTGACCGCATCGCGCCCGGCGGGCACCTCGGGCAGCAGCGCCCAGTCTTCTTCGCGGATCTCGCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCG > 8:232866/1‑107GCAGCAGATTGACCGCATCGCGCACGGCTGGCACCTCGGGCAGCAGCGCCCAGTCTTCTTCGCGGATCTCGCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCG < 7:232866/107‑1 TGACCGCATCGCGCCCGGCGGGCACCTCGGGCAGCAGCGCCCAGTCTTCTTCGCGGATCTCGCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCGAGA > 3:254163/1‑101 TGACCGCATCGCGCCCGGCGGGCACCTCGGGCAGCAGCGCCCAGTCTTCTTCGCGGATCTCGCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCGAGA < 4:254163/101‑1 GCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCGAGATCCGCGAAGAAGACTGGGCGCTGCTGCCCGAGGTGCCCGCCGGGCGCGATGCGGTCAATCTGCTGCCAGCTCAGTGTGACGAGCTGAAGGCGCGCCATTACATCGTTG < 7:33923/148‑1 GCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCGAGATCCGCGAAGAAGACTGGGCGCTGCTGCCCGAGGTGCCCGCCGGGCGCGATGCGGTCAATCTGCTGCCAGCTCAGTGTGACGAGCTGAAGGCGCGCCATTACATCGTTG > 8:33923/1‑148 GCAGCAGATTGACCGCATCGCGCCCGGCGGGCACCTCGGGCAGCAGCGCCCAGTCTTCTTCGCGGATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3318433‑3318503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgCCCATGGCCCCTACCCGGGGCTGTACCACATGGTCGAGATCCGCGAAGAAGACTGGGCGCTGCTGCCCGAGGTGCCCGCCGGGCGCGATGCGGTCAATCTGCTGCCAGCTCAGTGTGACGAGCTGAAGGCGCGCCATTACATCGTTG < NC_002947/3318537‑3318391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |