New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 381360868 (1.230)4 (0.080) 4/240 NT 6.3% coding (685/852 nt) PP_3369 LysR family transcriptional regulator
?NC_002947 = 3813643 56 (1.080)coding (720/852 nt) PP_3369 LysR family transcriptional regulator

GGCGCTACATCGGCTACGACGAGTCTCAGGCCCGTTCCCCACAACAGCAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCCTGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3813456‑3813608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcctgcTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAGGTTGAGCCATTGCTGTTG  <  NC_002947/3813643‑3813497
                                                                                                                                                                                                                                                                                                            
GGCGCTACATCGGCTACGACGAGTCTCAGGCCCGTTCCCCACAACAGCAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCCTGC                                                                                                                                                         <  8:312170/149‑1
                               CCGTTCCCCACAACAGCAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCCTGCCTGCTTCTTTCAGACCGTGTTCCTGTGCCAT                                                                                                                          >  3:223802/1‑149
                                  TTCCCCACAACAGCAATGGCGCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCCTGCCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAA                                                                                                                       >  7:258007/1‑149
                                      CCACAACAGCAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCC                                                                                                                                                            <  3:35086/108‑1
                                      CCACAACAGCAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCC                                                                                                                                                            >  4:35086/1‑108
                                             AGCAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCCTGCCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGC                                                                                                            <  8:258007/149‑1
                                               CAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCCTGCCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAG                                                                                                          <  4:223802/149‑1
                                                                                                                                                  TGCCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAGGTTGAGCCATTGC       >  7:182953/1‑149
                                                                                                                                                  TGCCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAG                    <  8:319598/136‑1
                                                                                                                                                  TGCCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAG                    >  7:319598/1‑136
                                                                                                                                                    CCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGgt                                                     >  7:164072/1‑99
                                                                                                                                                    CCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGgt                                                     <  8:164072/101‑3
                                                                                                                                                    CCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAGGTTGAGCCATTGCTG     <  3:8167/149‑1
                                                                                                                                                    CCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAGGTTGAGC             >  6:169665/1‑141
                                                                                                                                                    CCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAGGTTGAGC             <  5:169665/141‑1
                                                                                                                                                    CCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGC                          >  4:27838/1‑128
                                                                                                                                                    CCTGCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGC                          <  3:27838/128‑1
                                                                                                                                                       GCTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAGGTTGAGCCATTGCTGTTG  >  3:156539/1‑149
                                                                                                                                                                                                                                                                                                            
GGCGCTACATCGGCTACGACGAGTCTCAGGCCCGTTCCCCACAACAGCAATGGCTCAACCTCCAGGCCGGCCAGCAGCCGTTCGCATTGCACAGCAATGACCTGCGCATCCAGGCCCAAGCCTGTGCCGGCGGCATCGGCATCGCCTGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3813456‑3813608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcctgcTTCTTTCAGACCGTGTTCCTGTGCCATGAACGCGGGCAGGCAGGCGATGCCGATGCCGCCGGCACAGGCTTGGGCCTGGATGCGCAGGTCATTGCTGTGCAATGCGAACGGCTGCTGGCCGGCCTGGAGGTTGAGCCATTGCTGTTG  <  NC_002947/3813643‑3813497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.