New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3969591	NA (NA)	5 (0.100)	3/242	NT	NA	coding (226/321 nt)	PP_3499	transposase
	?	NC_002947	= 3969615	NA (NA)					coding (250/321 nt)	PP_3499	transposase

AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3969437‑3969591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatcaCTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAT  <  NC_002947/3969615‑3969468                                                                                                                                                                                                                                                                                                                 AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAG                                                                                                                                                            <  7:327710/149‑1  ACCGTGTGCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGGCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGT                                                                                                                                                           <  3:189294/149‑1     GTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGA                                                                                                                                                         >  3:230638/1‑148      TGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATC                                                                                                                                                       <  2:334270/149‑1                             GGCATCAATGCCAACGTCATCCGCAAATGGCTGCTGCTCTATCGAGATCTGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTC                                                                                                                                >  4:222145/1‑149                                       CCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCAC                                                                                                                       <  1:310454/148‑1                                         AACGTCATCCGCAAATGGCTGCTGCTCTATCGAGATCTGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGA                                                                                                                    <  3:222145/149‑1                                                     AAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGT                                                                                                                                                           <  1:330745/98‑1                                                     AAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGT                                                                                                                                                           >  2:330745/1‑98                                                                             CAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGA                                                                                                                              <  5:339080/103‑1                                                                             CAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGA                                                                                                                              >  6:339080/1‑103                                                                                                                                                      TGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGGTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCA       >  1:34403/1‑149                                                                                                                                                      TGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATA                                      <  7:203335/118‑1                                                                                                                                                      TGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATA                                      >  8:203335/1‑118                                                                                                                                                       GATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCAT      >  5:226282/1‑149                                                                                                                                                        ATCACTTGCCCCGCCCCCGGCAACTGGCTGATCACTGCCGCGTCGCCTGGCCCTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAACCCGCTGCCGGCTGATCTCGATAGCGCGGCAGCCATTTGCGGATGACGTTGGCATT     <  6:226282/149‑1                                                                                                                                                         TCACTTGCCCGGCCACGGGCAACTCGATGATCACTCACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATT     >  2:343561/1‑148                                                                                                                                                          CACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCGTTTAGCGGGACGAAAGCTGGTA                                                                  >  8:225970/1‑86                                                                                                                                                          CACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCCTTTAGCGGGACGAAAGCTGGTA                                                                  <  7:225970/86‑1                                                                                                                                                           ACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAT  >  2:235229/1‑149                                                                                                                                                                                                                                                                                                                 AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3969437‑3969591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatcaCTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAT  <  NC_002947/3969615‑3969468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.