| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4254758 | 65 (1.170) | 4 (0.080) | 4/238 | NT | 6.1% | coding (1370/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 4254787 | 63 (1.220) | coding (1341/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator | |||||
GCGAAGGAGCTGGTGACCCCGCTGAGACAGGCTGCCCGCGAGCCATGTCGAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4254606‑4254758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggccagCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAGCTCGACATGGCTCGCG < NC_002947/4254787‑4254642 GCGAAGGAGCTGGTGACCCCGCTGAGACAGGCTGCCCGCGAGCCATGTCGAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGG < 5:181108/149‑1GCGAAGGAGCTGGTGACCCCGCTGAGACAGGCTGCCCGCGAGCCATGTCGAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCCCCACGCCCAGG > 5:74592/1‑149 CGAAGGAGCTGGTGACCCCGCTGAGACAGGCTGCCCGCGAGCCATGTCGAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGC < 8:48844/149‑1 GAAGGAGCTGGTGACCCCGCTGAGACAGGCTGCCCGCGAGCCATGTCGAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGC > 2:185214/1‑148 CCATGTCGAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGG < 5:294953/149‑1 GAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGG < 6:74592/148‑1 TCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGG > 3:4146/1‑139 TCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGG < 4:4146/139‑1 CCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCC < 2:125377/74‑1 CCAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAG > 4:20796/1‑139 CCAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAG < 3:20796/139‑1 CAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAGCTCGACATGGC > 5:199427/1‑149 CAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAGCTCGACATGG > 5:82730/1‑148 CAGGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAGCTCGACATGG < 6:82730/148‑1 GGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGA > 4:24371/1‑99 GGCCAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGA < 3:24371/99‑1 CAGCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAGCTCGACATGGCTCGCG < 4:85900/149‑1 GCGAAGGAGCTGGTGACCCCGCTGAGACAGGCTGCCCGCGAGCCATGTCGAGCTCGAACCAAAAGCAGCTGCCCTGCCCTTGAACGCTCTCAAGGCCGATGCTACCGCCCAGTTTTTCCACCAGGTGCTTGCAGATCGCCAGGCCCAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4254606‑4254758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggccagCGAAGCTGTGACCCAGCGCTATGGCGGCACTGGCCTGGGCCTGGCGATCTGCAAGCACCTGGTGGAAAAACTGGGCGGTAGCATCGGCCTTGAGAGCGTTCAAGGGCAGGGCAGCTGCTTTTGGTTCGAGCTCGACATGGCTCGCG < NC_002947/4254787‑4254642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |