New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4407246 =	62 (1.120)	4 (0.080)	3/246	NT	6.5%	coding (598/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	4407282 =	56 (1.050)					coding (562/1299 nt)	PP_3889	putative Phage integrase
Rejected: Coverage evenness skew score above cutoff.

ACCTGATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4407398‑4407246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACT  >  NC_002947/4407282‑4407428                                                                                                                                                                                                                                                                                                              ACCTGATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAG                                                                                                                                                         >  3:251402/1‑149   CTGATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGC                                                                                                                                                       <  2:60021/149‑1     GATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCC                                                                                                                                                      >  6:55700/1‑148      ATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCA                                                                                                                                                     <  4:251402/148‑1      ATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCC                                                                                                                                                      <  8:222113/147‑1         TGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCATTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCC                                                                                                                                                      >  8:155569/1‑144                                                                                                                 TCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCC                                              <  3:184590/144‑1                                                                                                                 TCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCC                                              >  4:184590/1‑144                                                                                                                     ATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCC                                              <  7:179811/140‑1                                                                                                                     ATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCC                                              >  8:179811/1‑140                                                                                                                                                        CATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTAAGCAGCATGCGGAACATCTGTCGCTGGTAGTACAGGGACAGCTTGGCCTGGCCGGGCAAGTTCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACT  <  1:60021/149‑1                                                                                                                                                         ATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTCGGC                                                    <  4:139161/98‑1                                                                                                                                                         ATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTAGGC                                                    >  3:139161/1‑98                                                                                                                                                                                                                                                                                                              ACCTGATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4407398‑4407246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACT  >  NC_002947/4407282‑4407428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.