New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 484162249 (0.880)3 (0.060) 3/242 NT 6.7% coding (546/609 nt) ccoO‑II cbb3‑type cytochrome c oxidase subunit
?NC_002947 = 4841652 37 (0.710)coding (576/609 nt) ccoO‑II cbb3‑type cytochrome c oxidase subunit

GGAATCGAAGATGCCTTCCTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4841472‑4841622
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagaccTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTGCCCTTGACCGCGTCACGTGCGCCGGCAATGTCGGCGTCGGTGTACGGGGTGCCGAGTGTGCGCAGCACTTCCATCTTCTTCGCGGTGTCCTTGCCGTCGAGCTTGTTC  <  NC_002947/4841652‑4841508
                                                                                                                                                                                                                                                                                                        
GGAATCGAAGATGCCTTCCTACCCGTGGCGGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAACATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTTACGCGGTCAAGGGCAAGA                                                                                                                                                     <  2:132285/149‑1
  AATCGAAGATGCCTTCCTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGACC                                                                                                                                                   >  6:317946/1‑149
    TCGAAGATGCCTTCCTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACGCCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGC                                                                                                                                                         >  8:88771/1‑141
    TCGAAGATGCCTTCCTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACGCCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGC                                                                                                                                                         <  7:88771/141‑1
      GAAGATGCCTTCCTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGAC                                                                                                                                                    >  3:240763/1‑144
      GAAGATGCCTTCCTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGAC                                                                                                                                                    <  4:240763/144‑1
                  CTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGA                                                                                                                                                     <  5:348526/131‑1
                  CTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGA                                                                                                                                                     >  6:348526/1‑131
                      CCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGAC                                                                                                                                                    >  7:21742/1‑128
                      CCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGAC                                                                                                                                                    <  8:21742/128‑1
                                          GCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGACCTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTGCCC                                                                                                           <  5:317946/149‑1
                                                 GGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGACCTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTG                                                                                                              >  4:92627/1‑139
                                                 GGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGACCTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTG                                                                                                              <  3:92627/139‑1
                                                                                                  CGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGC                                                                                                                                                         <  5:290703/47‑1
                                                                                                  CGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGC                                                                                                                                                         >  6:290703/1‑47
                                                                                                                                               tcgcggCCTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTGCCCTTGACCGCGTCACGTGCGCCGGCAATGTCGGCGTCGGTGTACGGGGTGCCGAGTGTGCGCAGCACTTCCATCTTCTTCGCGGTGTCCTTGCCGTCGAGCTT      <  6:44361/143‑1
                                                                                                                                                CAAGACCTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTGCCCTTGACCGCGTCACGTGCGCCGGCAATGTCGGCGTCGGTGTACGGGGTGCCGAGTGTGCGCAGCACTTCCATCTTCTTCGCGGTGTCCTTGCCGTCGAGCTTG     >  6:154704/1‑149
                                                                                                                                                 AAGACCTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTGCCCTTGACCGCGTCACGTGCGCCGGCAATGTCGGCGTCGGTGTACGGGGTGCCGAGTGTGCGCAGCACTTCCATCTTCTTCGCGGTGTCCTTGCCGTCGAGCTTGT    >  8:87558/1‑149
                                                                                                                                                   GACCTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTGCCCTTGACCGCGTCACGTGCGCCGGCAATGTCGGCGTCGGTGTACGGGGTGCCGAGTGTGCGCAGCACTTCCATCTTCTTCGCGGTGTCCTTGCCGTCGAGCTTGTTC  <  4:27982/149‑1
                                                                                                                                                                                                                                                                                                        
GGAATCGAAGATGCCTTCCTACCCGTGGCTGGTCGAGAACAAGCTCGACGGCAAGGACACCGCGAAGAAGATGGAAGTGCTGCGCACACTCGGCACCCCGTACACCGACGCCGACATTGCCGGCGCACGTGACGCGGTCAAGGGCAAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4841472‑4841622
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagaccTTGCAGGTACGCGACGATGGCGTCCATTTCGGTCTTGCCCTTGACCGCGTCACGTGCGCCGGCAATGTCGGCGTCGGTGTACGGGGTGCCGAGTGTGCGCAGCACTTCCATCTTCTTCGCGGTGTCCTTGCCGTCGAGCTTGTTC  <  NC_002947/4841652‑4841508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.