| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4860136 | 55 (0.990) | 4 (0.080) | 3/234 | NT | 7.1% | coding (914/2331 nt) | ligA | DNA ligase |
| ? | NC_002947 | = 4860160 | 54 (1.070) | coding (890/2331 nt) | ligA | DNA ligase | |||||
GTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4859986‑4860136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcgcgAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGT < NC_002947/4860160‑4860019 GTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCA < 3:3099/146‑1GTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCA > 4:3099/1‑146 CGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGG < 4:111970/149‑1 CGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGG < 7:305838/149‑1 ACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGC > 3:50830/1‑120 ACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGC < 4:50830/120‑1 cggaaGCCCAGCTCGCGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCT > 8:293978/6‑148 CCAGCTCGCGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAA < 1:339057/70‑1 CCAGCTCGCGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAA > 2:339057/1‑70 AGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGT > 2:56703/1‑148 GCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTG > 5:310910/1‑102 GCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTG < 6:310910/102‑1 GTGGCGTTGGACACCGTCACACCGGCCACCTTGACCGGCTTCAGCCGCGCCACAGGCGTTACTGCACCCGTACGGCCAACCTGGAACTCGACATCCAGCACCTCGGTCAGCTCTTCCATGGCCGGGAACTTGTGGGCAATCGCCCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4859986‑4860136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcgcgAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTCGAGTTCCAGGTTGGCCGTACGGGTGCAGTAACGCCTGTGGCGCGGCTGAAGCCGGT < NC_002947/4860160‑4860019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |