New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4960320 = | 58 (1.050) | 5 (0.090) | 5/250 | NT | 7.7% | coding (151/1779 nt) | fliF | flagellar M‑ring protein |
? | NC_002947 | 4960368 = | 64 (1.180) | coding (103/1779 nt) | fliF | flagellar M‑ring protein |
ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4960470‑4960320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCTGCATGATGTCCTGG > NC_002947/4960368‑4960513 ATGGCTGAAGCAGTCGTCGAAAACG‑CCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCACCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTG > 6:195376/1‑149 TGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTG < 6:194203/149‑1 GCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGG < 6:345189/148‑1 GGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGT > 6:68307/1‑149 CCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGC > 5:256023/1‑149 CCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGC > 4:142106/1‑148 TCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGT < 5:68307/149‑1 GCCTCCTGGTCGGCCTGGCGGCCAGCGTGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCT < 3:142106/149‑1 TGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCTGCATGATGTCCTGG > 2:136266/1‑149 TGGGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCTGCATGATGTCCTGG > 5:128705/1‑149 ATGGCTGAAGCAGTCGTCGAAAACGCCCCCGCCAAAGCTGGCTCGCCAGCGGCCAAGCCGCCGCTGTTTGGCATGGCGTTTCTGGAAAACATCTCGCAGATGCCCATGCTGCGCCAGATCGGCCTCCTGGTCGGCCTGGCGGCCAGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4960470‑4960320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggGCATCTGCGAGATGTTTTCCAGAAACGCCATGCCAAACAGCGGCGGCTTGGCCGCTGGCGAGCCAGCTTTGGCGGGGGCGTTTTCGACGACTGCTTCAGCCATGGGTTACATCCGTCCTCAAACCGGCATCTGCATGATGTCCTGG > NC_002947/4960368‑4960513 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |