| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4960665 = | 39 (0.700) | 3 (0.060) | 3/242 | NT | 7.2% | coding (154/333 nt) | fliE | flagellar hook‑basal body complex protein FliE |
| ? | NC_002947 | 4960707 = | 40 (0.760) | coding (112/333 nt) | fliE | flagellar hook‑basal body complex protein FliE | |||||
TGAGCCAAGGTGTTGAATTCAATCGTCTGATGTTGGACATGCGGGCCATGCAGGCCGATGCCATGTCGCTGCCCAAGGTAACTGCCGCCCCCGAGCTGGCGCCAGGGCAAAGCACCTTCGCCGACATGCTCGGCCAGGCCATCGGCAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4960817‑4960665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggtgcTTTGCCCTGGCGCCAGCTCGGGGGCGGCAGTTACCTTGGGCAGCGACATGGCATCGGCCTGCATGGCCCGCATGTCCAACATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTT > NC_002947/4960707‑4960850 TGAGCCAAGGTGTTGAATTCAATCGTCTGATGTTGGACATGCGGGCCATGCAGGCCGATGCCATGTCGCTGCCCAAGGTAACTGCCGCCCCCGAGCTGGCGCCAGGGCAAAGCACCTTCGCCGACATGCTCGGCCAGGCCATCGGCAAG < 3:212703/149‑1TGAGCCAAGGTGTTGAATTCAATCGTCTGATGTTGGACATGCGGGCCATGCAGGCCGATGCCATGTCGCTGCCCAAGGTAACTGCCGCCCCCGAGCTGGCGCCAGGGCAAAGCACCTTCGCCGACATGCTCGGCCAGGCCATCGGCAAG < 4:188552/149‑1TGAGCCAAGGTGTTGAATTCAATCGTCTGATGTTGGACATGCGGGCCATGCAGGCCGATGCCATGTCGCTGCCCAAGGTAACTGCCGCCCCCGAGCTGGCGCCAGGGCAAAGCACCTTCGCCGACATGCTCGGCCAGGCCATCGGCAAG > 5:345692/1‑149 CCAAGGTGTTGAATTCAATCGTCTGATGTTGGACATGCGGGCCATGCAGGCCGATGCCATGTCGCTGCCCAAGGTAACTGCCGCCCCCGAGCTGGCGCCAGGGCAAAGCACCTTCGCCGACATGCTCGGCCAGGCCATCGGCAAGGTGC < 6:345692/149‑1 GCAAAGCACCTTCGCCGACATGCTCGGCCAGGCCATCGGCAAGGTGCTTTGCCCTGGCGCCAGCTCGGGGGCGGCAGTTACCTTGGGCAGCGACATGGCATCGGCCTGCATGGCCCGCATGTCCAACATCAGACGATTGAATTCAACAC > 6:312154/1‑149 CTTCGCCGACATGCTCGGCCAGGCCATCGGCAAGGTGCTTTGCCCTGGCGCCAGCTCGGGGGCGGCAGTTACCTTGGG > 3:14780/1‑78 CTTCGCCGACATGCTCGGCCAGGCCATCGGCAAGGTGCTTTGCCCTGGCGCCAGCTCGGGGGCGGCAGTTACCTTGGG < 4:14780/78‑1 GGTGCTTTGCCCTGGCGCCAGCTCGGGGGCGGCAGTTACCTTGGGCAGCGACATGGCATCGGCCTGCATGGCCCGCATGTCCAACATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTT < 4:212703/149‑1 GGTGCTTTGCCCTGGCGCCAGCTCGGGGGCGGCAGTTACCTTGGGCAGCGACATGGCATCGGCCTGCATGGCCCGCATGTCCAACATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTT < 7:216291/149‑1 TGAGCCAAGGTGTTGAATTCAATCGTCTGATGTTGGACATGCGGGCCATGCAGGCCGATGCCATGTCGCTGCCCAAGGTAACTGCCGCCCCCGAGCTGGCGCCAGGGCAAAGCACCTTCGCCGACATGCTCGGCCAGGCCATCGGCAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4960817‑4960665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggtgcTTTGCCCTGGCGCCAGCTCGGGGGCGGCAGTTACCTTGGGCAGCGACATGGCATCGGCCTGCATGGCCCGCATGTCCAACATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTT > NC_002947/4960707‑4960850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |