New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4979899	33 (0.600)	4 (0.080)	4/246	NT	10.3%	coding (311/741 nt)	flgF	flagellar basal‑body rod protein FlgF
	?	NC_002947	= 4979934	38 (0.710)					coding (276/741 nt)	flgF	flagellar basal‑body rod protein FlgF

CGCGGGTCTTCACCCATGGAGCGGATGCTGATGGTGCCGTCGGCACCCACTTCCACTTTCTGCTCCGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4979749‑4979899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcGCCGGACGGCAGCGAAGCCTATGTGCGTACCGGTAGCCTGAACATCGA  <  NC_002947/4979934‑4979887                                                                                                                                                                                                         CGCGGGTCTTCACCCATGGAGCGGATGCTGATGGTGCCGTCGGCACCCACTTCCACTTTCTGCTCCGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAG                                                    <  4:200456/149‑1  GCGGGTCTTCACCCATGGAGCGGATGCTGATGGTGCCGTCGGCACCCACTTCCACTTTCTGCTCCGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAGG                                                   <  5:221624/149‑1                                                       ACTTTCTGCTCCGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAGGCGCCGGACGGCAGCGAAGCCTATGTGCGTACCGGTAGCCTGAACATC    <  3:335400/143‑1                                                       ACTTTCTGCTCCGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAGGCGCCGGACGGCAGCGAAGCCTATGTGCGTACCGGTAGCCTGAACATC    >  4:335400/1‑143                                                                  CGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAGTCGCCGGACGGCAGCGAAGCCTATGTGCGTACCGGTAGCCTGAACATCGA  <  1:85281/134‑1                                                                  CGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAGGCGCCGGACGGCAGCGAAGCCTATGTGCGTACCGGTAGCCTGAACATCGA  >  2:85281/1‑134                                                                                                                                                                                                         CGCGGGTCTTCACCCATGGAGCGGATGCTGATGGTGCCGTCGGCACCCACTTCCACTTTCTGCTCCGGCGGGATGGCGATCGGGCCACCGTTGCCGATCACCGGCATGCCATTGCCGGCACGCAGCACACCGAGGGCATCGATGTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4979749‑4979899 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcGCCGGACGGCAGCGAAGCCTATGTGCGTACCGGTAGCCTGAACATCGA  <  NC_002947/4979934‑4979887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.