New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5170967 =	65 (1.170)	4 (0.070)	4/250	NT	5.8%	coding (1196/1308 nt)	PP_4548	oxidoreductase
	?	NC_002947	5171006 =	67 (1.240)					coding (1235/1308 nt)	PP_4548	oxidoreductase

CGCCGTCTTCAGACATTGTGAGTCCCTGTAGGCGCAACTCAGCGCAGCTTCTCAAGCATCTGGTAATACCACATCCCCGCCGCCAGCAGCGGGTTCCCCAGCAAGTCCCCCATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5171117‑5170967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCATCTTATTGTGGGGCCTTGTGTCGCGAAAGGG  >  NC_002947/5171006‑5171153                                                                                                                                                                                                                                                                                                             CGCCGTCTTCAGACATTGTGAGTCCCTGTAGGCGCAACTCAGCGCAGCTTCTCAAGCATCTGGTAATACCACATCCCCGCCGCCAGCAGCGGGTTCCCCAGCAAGTCCCCCATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTC                                                                                                                                                        <  4:167730/149‑1   CCGTCTTCAGACATTGTGAGTCCCTGTAGGCGCAACTCAGCGCAGCTTCTCAAGCATCTGGTAATACCACATCCCCGCCGCCAGCAGCGGGTTCCCCAGCAAGTCCCCCATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGA                                                                                                                                                      <  7:184894/149‑1                                                                                                                ATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTG                                               <  7:257143/143‑1                                                                                                                ATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTG                                               >  8:257143/1‑143                                                                                                                 TCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGG                                        >  6:150143/1‑149                                                                                                                      ACCCGCACATGCCTGCACTGGGCG‑‑GGTGCCGATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCA                                 >  1:186407/1‑149                                                                                                                                                      GATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCATCTTATTGTGGGGCCTTGTGTCGCGAAAGG   <  4:7901/149‑1                                                                                                                                                       ATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCATCTTATTGTGGGGCCTTGTGTCGCGAAAGGG  <  8:184894/149‑1                                                                                                                                                                                                                                                                                                             CGCCGTCTTCAGACATTGTGAGTCCCTGTAGGCGCAACTCAGCGCAGCTTCTCAAGCATCTGGTAATACCACATCCCCGCCGCCAGCAGCGGGTTCCCCAGCAAGTCCCCCATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5171117‑5170967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCATCTTATTGTGGGGCCTTGTGTCGCGAAAGGG  >  NC_002947/5171006‑5171153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.