New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5193931	60 (1.080)	3 (0.060)	3/244	NT	5.0%	coding (252/1179 nt)	PP_4574	hypothetical protein
	?	NC_002947	= 5193981	58 (1.100)					coding (302/1179 nt)	PP_4574	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

TTCGCCGACATGGACGAGTTCTACTACCTCGCCCGCGCCATCCTGGTGAAGGATGAACGCCACTTCGACAAGTTCGACCGTGCCTTCGCAGCCTATTTCAAGGGCCTGGAAAACCTCGACCGGCATATCGAGGCGCTAATCCCCGAAGACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5193779‑5193931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggATCTGCGCGCGTTCTTCATCGGTCAGCGAGCGCTCGAATTCCTTGCGC‑AGCCAGTCTTCGGGGATTAGCGCCTCGATATGCCGGTCGAGGTTTTCCAGGCCCTTGAAATAGGCTGCGAAGGCACGGTCGAACTTGTCGAAGTGGCGT  <  NC_002947/5193981‑5193835                                                                                                                                                                                                                                                                                                               TTCGCCGACATGGACGAGTTCTACTACCTCGCCCGCGCCATCCTGGTGAAGGATGAACGCCACTTCGACAAGTTCGACCGTGCCTTCGCAGCCTATTTCAAGGGCCTGGAAAACCTCGACCGGCATATCGAGGCGCTAATCCCCGAAGA                                                                                                                                                          >  5:224048/1‑149                                                    GATGAACGCCACTTCGACAAGTTAGAACGTGCCTTCGCAGCATATTTCAAGGGCCTGGAAAACCTCGACCGTCATATCGAGGCGCTAATCCCCGAAGACTGGATCTGCTCGCGTTCTTCATCGGTCAGCGATCGCTCGAATTCCTTGag                                                                                                       >  4:251927/1‑147                                                                  CGACAAGTTCGACCGTGCCTTCGCAGCCTATTTCACGGGCCTGGAAAACCTCGACCGGCATATCGAGGCGCTAATCCCCGAAGACTGGATCTGCGCGCGTTCTTCATCGGTCAGCGAGCGCTCGAATTCCTTGCGC‑AGCCAGTCTTCG                                                                                         <  3:52124/148‑1                                                                   GACAAGTTCGACCGTGCCTTCGCAGCCTATTTCAAGGGCCTGGAAAACCTCGACCGGCATATCGAGGCGCTAATCCCCGAAGACTGGATCTGCGCGCGTTCTTCATCGGTCAGCTAGCGCTCGAATTCCTTGCGC‑AGCCAGTCTTCGG                                                                                        <  3:251927/148‑1                                                                                                                                                       TGGATCTGCGCGCGTTCTTCATCGGTCAGCGAGCGCTCGAATTCCTTGCGCGAGCCAGTCTTCGGGGATTAGCGCCTCGATATGCCGGTCGAGGTTTTCCAGGCCCTTGAAATAGGCTGCGAAGGCACGGTCGAACTTGTCGAAGTGGC    >  1:268644/1‑149                                                                                                                                                         GATCTGCGCGCGTTCTTCATCGGTCAGCGAGCGCTCGAATTCCTTGCGC‑AGCCAGTCTTCGGGGATTAGCGCCTCGATATGCCGGTCGAGGTTTTCCAGGCCCTTGAAATAGGCTGCGAAGGCACGGTCGAACTTGTCGAAGTGGCGT  <  4:32673/148‑1                                                                                                                                                         GATCTGCGCGCGTTCTTCATCGGTCAGCGAGCGCTCGAATTCCTTGCGC‑AGCCAGTCTTCGGGGATTAGCGCCTCGATATGCCGGTCGAGGTTTTCCAGGCCCTTGAAATAGGCTGCGAAGGCACGGTCGAACTTGTCGAAGTGGCGT  <  4:37204/148‑1                                                                                                                                                                                                                                                                                                               TTCGCCGACATGGACGAGTTCTACTACCTCGCCCGCGCCATCCTGGTGAAGGATGAACGCCACTTCGACAAGTTCGACCGTGCCTTCGCAGCCTATTTCAAGGGCCTGGAAAACCTCGACCGGCATATCGAGGCGCTAATCCCCGAAGACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5193779‑5193931 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactggATCTGCGCGCGTTCTTCATCGGTCAGCGAGCGCTCGAATTCCTTGCGC‑AGCCAGTCTTCGGGGATTAGCGCCTCGATATGCCGGTCGAGGTTTTCCAGGCCCTTGAAATAGGCTGCGAAGGCACGGTCGAACTTGTCGAAGTGGCGT  <  NC_002947/5193981‑5193835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.