New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5583793 | 58 (1.050) | 4 (0.080) | 4/242 | NT | 6.6% | coding (1939/2259 nt) | parC | DNA topoisomerase IV subunit A |
? | NC_002947 | = 5583844 | 58 (1.110) | coding (1888/2259 nt) | parC | DNA topoisomerase IV subunit A |
CACCCGGTCACCCGGCACGCCAATGATCTTGTTGCCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5583671‑5583793 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgctcAGCTTGCCCAACGGGGCCAAGGTCATGACCCCGCGCCCGGTGGCCGATCGCGAGCAGGAC < NC_002947/5583844‑5583785 CACCCGGTCACCCGGCACGCCAATGATCTTGTTGCCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCAGCTTGCCCAACGGGGCCAAGGTCAT > 7:198709/1‑149 CCGGCACGCCAATGATCTTGCTGCCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCAGCTTGCCCAACGGGGCCAAGGTCATGACCCCGCGCC > 4:103959/1‑149 CCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCAGCTTGCCCAACGGGGCCAAGGTCATGACCCCGCGCCCGGTGGCCGATCGCGAGCAGGAC < 3:103959/149‑1 CCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTCAGCTTGCCCAACGGGGCCAAGGTCATGACCCCGCGCCCGGTGGCCGATCGCGAGCAGGA < 8:198709/148‑1 CACCCGGTCACCCGGCACGCCAATGATCTTGTTGCCCTTGCCTTTACCCAGCTGTGGCAAGTCGCTGACCTTGAACACCAGCAGGCGGCCTTCGGTGGTCACCGCCGCCAACCAGTCCTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5583671‑5583793 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgctcAGCTTGCCCAACGGGGCCAAGGTCATGACCCCGCGCCCGGTGGCCGATCGCGAGCAGGAC < NC_002947/5583844‑5583785 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |