| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5672990 = | 69 (1.250) | 6 (0.110) | 5/246 | NT | 8.7% | coding (233/1881 nt) | rhlE‑II | ATP‑dependent RNA helicase |
| ? | NC_002947 | 5673033 = | 60 (1.130) | coding (276/1881 nt) | rhlE‑II | ATP‑dependent RNA helicase | |||||
GCTGCCAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5673035‑5672990‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATTGCCAAAGGCGTTGATGTGCTGGTCGCCTGCCCAGGCCGCCTGCT > NC_002947/5673033‑5673179 GCTGCCAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATT < 3:134782/149‑1GCTGCCAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATT > 4:134782/1‑149GCTGCCAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGC < 5:301094/119‑1GCTGCCAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGC > 6:301094/1‑119 TGCCAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCAAGGCCATTGC > 4:323570/1‑149 CAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATTGCCA > 6:309120/1‑148 GCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATTGCCAAAGGCGTTGATGTGCTGGTCGCCTGCCCAGGCCGCCTGCT > 8:214046/1‑149 GCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATTGCCAAAGGCGTT < 7:265130/117‑1 GCAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATTGCCAAAGGCGTT > 8:265130/1‑117 GCTGCCAGTTCGCGGGTCGGCGTCAGGACCAGCACGCGAGGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5673035‑5672990‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcAGCCCAGGTGCATGACAGTTTCAAGGTCTATGCCCGTGACCTGCCACTGGTCAGCGCCTGCATCTTCGGCGGCGTTGGCATGAACCCGCAGATCCAGGCCATTGCCAAAGGCGTTGATGTGCTGGTCGCCTGCCCAGGCCGCCTGCT > NC_002947/5673033‑5673179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |