| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5745483 | 56 (1.010) | 4 (0.080) | 4/242 | NT | 6.7% | coding (382/2451 nt) | glgP | glycogen phosphorylase |
| ? | NC_002947 | = 5745511 | 58 (1.110) | coding (354/2451 nt) | glgP | glycogen phosphorylase | |||||
CCAGGGGTTGCCGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5745334‑5745483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccgcGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTCATGGAGAGCATGTCTACCCTGGGTATCGCTGCCCATGGTTACGGCATCCGCTACGAGCACGGGCTGTTCCGTCAGGCTGTGGTCGATGGCTGGCAGCAGGAACAGAC < NC_002947/5745511‑5745365 CCAGGGGTTGCCGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCC < 2:266667/148‑1CCAGGGGTTGCCGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGC < 1:49027/147‑1CCAGGGGTTGCCGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGC > 2:49027/1‑147 CAGGGGTTGCCGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGC < 3:96864/149‑1 GGGTTGCCGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGC > 8:212982/1‑146 CGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGCGCTGGGCAAT > 6:64601/1‑149 CTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGCGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTCA < 5:64601/149‑1 GGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGCGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTC < 3:276470/122‑1 GGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGCGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTC > 4:276470/1‑122 CCGCGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTCATGGAGAGCATGTCTACCCTGGGTATCGCTGCCCATGGTTACGGCATCCGCTACGAGCACGGGCTGTTCCGTCAGGCTGTGGTCGATGGCTGGCAGCAGGAACAG < 1:317035/149‑1 GCGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTCATGGAGAGCATGTCTACCCTGGGTATCGCTGCCCATGGTTACGGCATCCGCTACGAGCACGGGCTGTTCCGTCAGGCTGTGGTCGATGGCTGGCAGCAGGAACAGAC > 4:110688/1‑149 GCGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTCATGGAGAGCATGTCTACCCTGGGTATCGCTGCCCATGGTTACGGCATCCGCTACGAGCACGGGCTGTTCCGTCAGGCTGTGGTCGATGGCTGGCAGCAGGAACAGAC < 5:180895/149‑1 CCAGGGGTTGCCGAAATCCAGCCAGTTCTCGGTCTGTTCCTGCTGCCAGCCATCGACCACAGCCTGACGGAACAGCCCGTGCTCGTAGCGGATGCCGTAACCATGGGCAGCGATACCCAGGGTAGACATGCTCTCCATGAAGCACGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5745334‑5745483‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccgcGCTGGGCAATGGCGGCCTTGGCCGTCTGGCGGCGTGCTTCATGGAGAGCATGTCTACCCTGGGTATCGCTGCCCATGGTTACGGCATCCGCTACGAGCACGGGCTGTTCCGTCAGGCTGTGGTCGATGGCTGGCAGCAGGAACAGAC < NC_002947/5745511‑5745365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |