New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5989280	50 (0.900)	3 (0.060)	3/228	NT	5.4%	noncoding (29/87 nt)	PP_mr64	C4 ncRNA
	?	NC_002947	= 5989327	61 (1.240)					noncoding (76/87 nt) coding (38/399 nt)	PP_mr64 PP_5247	C4 ncRNA hypothetical protein

TTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5989120‑5989280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagttgtgcgcgGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGA  <  NC_002947/5989327‑5989193                                                                                                                                                                                                                                                                                                           TTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGG                                                                                                                                                     <  3:153192/149‑1    ACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCA                                                                                                                                                   <  1:102974/149‑1    ACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAG                                                                                                                                                  <  5:170405/149‑1    ACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCA                                                                                                                                                   <  3:237535/148‑1      ACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTT                                                                                                                                                >  7:114775/1‑149             CCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGATGTGCGC                                                                                                                                          <  2:45526/148‑1                                                TCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGG                                                                                                                                                     <  7:339541/102‑1                                                TCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGG                                                                                                                                                     >  8:339541/1‑102                                                            GGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCA                                                                                          >  8:176260/1‑149                                                                       CTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACT                                                                               <  7:176260/149‑1                                                                            TAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGC                                                                             <  3:335805/146‑1                                                                                                                                                     GGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGA  <  1:147424/149‑1                                                                                                                                                             TGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTG                             <  5:94386/114‑1                                                                                                                                                                                                                                                                                                           TTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCG‑CTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5989120‑5989280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagttgtgcgcgGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGA  <  NC_002947/5989327‑5989193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.