New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6001629	77 (1.390)	3 (0.060)	3/238	NT	4.0%	coding (672/1299 nt)	amaA	L‑pipecolate oxidase
	?	NC_002947	= 6001668	72 (1.400)					coding (633/1299 nt)	amaA	L‑pipecolate oxidase
Rejected: Frequency below/above cutoff threshold.

CCTTGTCGGCTGCGATGCCCTGCAGCGGTTTGGAGGCTACCTGATAGTAATAACCGCGGAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6001475‑6001629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtcttcGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTGGCGCTGTGCGCGCCGAAAAGGTGGTGATTTCCACCGGCGCCTACACCGAAGGTGACTGGAGCAACCTGCAGAAGCAGTTCTTCCGCGGTTAT  <  NC_002947/6001668‑6001524                                                                                                                                                                                                                                                                                                              CCTTGTCGGCTGCGATGCCCTGCAGCGGTTTGGAGGCTACCTGATAGTAATAACCGCGGAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCG                                                                                                                                                           >  4:230752/1‑147    TGTCGGCTGCGATGCCCTGCAGCGGTTTGGAGGCTACCTGATAGTAATAACCGCGGAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCAGT                                                                                                                                                       >  5:184373/1‑148     GTCGGCTGCGATGCCCTGCAGCGGTTTGGAGGCTACCTGATAGTAATAACCGCGGAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCAGTC                                                                                                                                                      <  1:76623/148‑1           ttCGATGCCCTGCAGCGGTTTGGAGGCTACCTGATAGTAATAACCGCGGAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCA                                                                                                                                                         <  7:151692/137‑1           TGCGATGCCCTGCAGCGGTTTGGAGGCTACCTGATAGTAATAACCGCGGAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCA                                                                                                                                                         >  8:151692/1‑139                                                         cgtAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCAGTCTTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGC                                                                                                 <  6:13168/146‑1                                                                                  TCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCAGTCTTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTG                                                                                              >  5:266603/1‑127                                                                                  TCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCAGTCTTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTG                                                                                              <  6:266603/127‑1                                                                                                                                                    CAGTCTTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTGGCGCTGTGCGCGCCGAAAAGGTGGTGATTTCCACCGGCGCCTACACCGAAGGTGACTGGAGCAACCTGCAGAAGCAGTTCTTCCGC        >  1:342736/1‑147                                                                                                                                                    CAGTCTTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTGGCGCTGTGCGCGCCGAAAAGGTGGTGATTTCCACCGGCGCCTACACCGAAGGTGACTGGAGCAACCTGCAGAAGCAGTTCTTCCGC        <  2:342736/147‑1                                                                                                                                                         TTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGATGACTGCGCGTGGCGCTGTGCGCGCCGAAAAGGTGGTGATTTCCACCGGCGCCTACACCGAAGGTGACTGGAGCAACCTGCAGAAGCAGTTCTTCCGCGGTTAT  >  6:184373/1‑148                                                                                                                                                         TTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTGGCGCTGTGCGCGCCGAAAAGGTGGTGATTTCCACCGGCGCCTACACCGAAGGTGACTGGA                                  <  7:103192/116‑1                                                                                                                                                         TTCGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTGGCGCTGTGCGCGCCGAAAAGGTGGTGATTTCCACCGGCGCCTACACCGAAGGTGACTGGA                                  >  8:103192/1‑116                                                                                                                                                                                                                                                                                                              CCTTGTCGGCTGCGATGCCCTGCAGCGGTTTGGAGGCTACCTGATAGTAATAACCGCGGAAGAACTGCTTCTGCAGGTTGCTCCAGTCACCTTCGGTGTAGGCGCCGGTGGAAATCACCACCTTTTCGGCGCGCACAGCGCCACGCGCAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6001475‑6001629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtcttcGGTCGAAGGCCTGGAGCGTGAAGGTGATGGCTGGCGAGTGAAGACTGCGCGTGGCGCTGTGCGCGCCGAAAAGGTGGTGATTTCCACCGGCGCCTACACCGAAGGTGACTGGAGCAACCTGCAGAAGCAGTTCTTCCGCGGTTAT  <  NC_002947/6001668‑6001524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.