New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6019024	49 (0.880)	4 (0.080)	4/244	NT	7.4%	coding (176/1074 nt)	dadX	alanine racemase
	?	NC_002947	= 6019092	54 (1.020)					coding (108/1074 nt)	dadX	alanine racemase

TTCTCGATGGCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6018871‑6019024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgcCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCTGCATCGAAGAG  <  NC_002947/6019092‑6019014                                                                                                                                                                                                                                           TTCTCGATGGCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTC                                                                                      >  8:133697/1‑149   CTCGATAGCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCG                                                                                     <  6:123573/148‑1      GATGGCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATG                                                                                  <  8:221348/148‑1                                    CACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCT                                                   >  1:144281/1‑149                                                                                   CAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCTGCATCGAA     <  2:144281/148‑1                                                                                                 AGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCTGCATCGAAGAG  >  3:122913/1‑137                                                                                                 AGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGCCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCTGCATCGAAGAG  <  4:122913/137‑1                                                                                                                                                                                                                                           TTCTCGATGGCTTCCAGTTGCCACAGCGAGTGCACCACGCACCACAGGTCGTGCTCGGCGATCAGCGCCAGTTCGCTGGCTTCAAAAAAACCTTCCAGCAGCAGTACCGGGGCTTTGATACCGGCGGCGCGCAGTTCCAGCGCCTCTTCGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6018871‑6019024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgcCTACGGCCACGGCGCCGTGCGCTGCGCCCTGGCCCTCGAGGCCGAAGCCGACGGCTTTGCCGTGGCCTGCATCGAAGAG  <  NC_002947/6019092‑6019014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.