| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1025293 | 13 (0.230) | 4 (0.090) | 4/202 | NT | 19.4% | intergenic (‑147/+82) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 1025332 | 23 (0.530) | intergenic (‑186/+43) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein | |||||
AGCTCCCTTTCTTTTCTAGTTATGGCCGGC‑CTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTT > NC_002947/1025153‑1025440 | aGCTCCCTTTCTTTTCTAGTTATGGCCGGCTCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCa > 1:31540/1‑145 (MQ=255)aGCTCCCTTTCTTTTCTAGTTATGGCCGGC‑CTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCa < 2:31540/144‑1 (MQ=255) ttctAGTTATGGCCGGC‑CTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAgtgt < 7:232246/146‑1 (MQ=255) tAGTTATGGCCGGC‑CTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCacaggatctcgacaggttcggaca > 3:142868‑M1/1‑125 (MQ=255) gTTATGGCCGGC‑CTTGTGGGCCGGGTGATTGCTGCGGTGTTACCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGaa < 3:186707/146‑1 (MQ=255) ccGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcg < 7:303268‑M1/149‑47 (MQ=255) cGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgg < 2:281430‑M1/149‑48 (MQ=255) ggTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggc < 4:142868‑M1/149‑50 (MQ=255) tgcGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGACCCTGTCGAGATCCTGTgggagcgggcgtgcgatcg < 8:302585‑M2/149‑20 (MQ=255) ggcgGTGTTGCCAGGGGTGCCGCGGGAGCGCCGGGCAGAATCGGGGCGTTGGGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTCGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggctt > 7:302585‑M2/2‑130 (MQ=255) cAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgccc < 8:64054‑M2/111‑17 (MQ=255) cAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgccc > 7:64054‑M2/1‑95 (MQ=255) gggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgc < 1:10165‑M2/105‑19 (MQ=255) gggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgc > 2:10165‑M2/1‑87 (MQ=255) tgtTGGCCGTTCTGGCCTCTTCGCGGACAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGa < 2:125657/142‑1 (MQ=255) tgtTGGCCGTTCTGGCCTCTTCGCGGACAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGa > 1:130679/1‑142 (MQ=255) tgtTGGCCGTTCTGGCCTCTTCGCGGACAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGa > 1:125657/1‑142 (MQ=255) tgtTGGCCGTTCTGGCCTCTTCGCCTACAAGCCCGCTCCCTCCGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGa < 2:130679/142‑1 (MQ=255) ggCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgc > 7:78631/1‑149 (MQ=255) ctctTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgc < 8:257241‑M2/77‑15 (MQ=255) ctctTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgc > 7:257241‑M2/1‑63 (MQ=255) tctTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggctt > 2:272101‑M2/1‑62 (MQ=255) cgcgGGCACGCCCGCTCCCTCCCGTCGGGCGCAGTGTCCGACCCTGTCGAGCTCCTGTGGGCGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGAc < 8:78631/148‑1 (MQ=38) cgatcgcacgcCCGCTCCCacaggatctcgacagggtcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgca < 8:302585‑M1/144‑131 (MQ=255) gcgGGCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccc < 1:10165‑M1/105‑88 (MQ=255) gcgGGCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccc > 2:10165‑M1/1‑18 (MQ=255) gggCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctg > 7:64054‑M1/1‑16 (MQ=255) gggCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctg < 8:64054‑M1/111‑96 (MQ=255) gCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagag < 8:257241‑M1/77‑64 (MQ=255) gCAAGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagag > 7:257241‑M1/1‑14 (MQ=255) gCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGaa > 1:68867/1‑149 (MQ=255) aaGCCCGCTCCCacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaaga > 2:272101‑M1/1‑12 (MQ=255) aaGCCCGCTCCCacaggatctcgacaggttcggacactgcgcccgacctgagggagcgggcttgcccgcgaagaggccagaacggccaacccaacgccccgattctgcccggcgctcccgcggcacccctggcaacaccgcc > 7:302585‑M1/1‑12 (MQ=255) aaGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGc > 4:48513/1‑93 (MQ=255) aaGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGc < 3:48513/93‑1 (MQ=255) gCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacc < 4:142868‑M2/149‑101 (MQ=255) ccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccg < 2:281430‑M2/149‑103 (MQ=255) ccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTggg > 1:205200/1‑148 (MQ=255) cGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccgg < 7:303268‑M2/149‑104 (MQ=255) gCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGGTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGaaa > 1:157520/1‑149 (MQ=255) agccTCAGGAATGGCGCAGAGTCCGAACCTGTCTACACCATCAGGGAGCGGGCTAGCCCGCTAAGAGTCCGGTACTGGCTAACGCTAAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAcc < 7:312656/147‑1 (MQ=255) ccTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACggg < 7:273334/126‑1 (MQ=255) ccTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACggg > 8:273334/1‑126 (MQ=255) ccTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCtt > 3:311777/1‑149 (MQ=255) | AGCTCCCTTTCTTTTCTAGTTATGGCCGGC‑CTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTT > NC_002947/1025153‑1025440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |