| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2099960 = | 26 (0.470) | 7 (0.150) | 5/210 | NT | 27.3% | intergenic (‑71/‑134) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | 2100055 = | 16 (0.350) | intergenic (‑166/‑39) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
GTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAA > NC_002947/2099815‑2100072 | gTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGGTTCGCGTTCCTTCCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCGTGgc < 1:36467/147‑1 (MQ=255) ccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCgg > 1:69072‑M1/136‑149 (MQ=255) agtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGc > 8:50407‑M1/134‑149 (MQ=255) gTGAAGTTTATATCCATGACTCCCGTGCCGTTTTCCAGTTCCTTGCGCTGGGGAAGCATAGCCGAATAGCCCAGGCTGCTGGTGGGGATTTGTGTTCATTTCAGTTTATCGCCATGG‑‑GGGGGCCGATTTGCGCCCCTCCGCGGGC‑TTg < 6:189519/148‑1 (MQ=255) gTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTg < 3:133111/148‑1 (MQ=255) gATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGCCCCCGCTTgg < 6:114334/122‑1 (MQ=255) gATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGCCCCCGCTTgg > 5:114334/1‑122 (MQ=255) gggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCggg < 8:170901‑M1/15‑1 (MQ=255) gggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCggg > 7:170901‑M1/123‑137 (MQ=255) tatCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCca < 1:343667/148‑1 (MQ=255) cATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAgg > 7:2701/1‑148 (MQ=255) aTGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCcgcg > 6:39495/1‑127 (MQ=255) aTGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCcgcg < 5:39495/127‑1 (MQ=255) tCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTcc > 8:258639/1‑136 (MQ=255) tCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTcc < 7:258639/136‑1 (MQ=255) cGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTGCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAg > 4:4646/1‑149 (MQ=255) ggTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGcaa < 8:317702/118‑3 (MQ=255) ggTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGcaa > 7:317702/1‑116 (MQ=255) tttCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACa < 4:225132/135‑1 (MQ=255) tttCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACa > 3:225132/1‑135 (MQ=255) cGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAAc < 7:57933/149‑1 (MQ=255) ctgcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgt < 8:2701/149‑1 (MQ=255) cAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCTGGGGGGCCGCTTGGCGCCCCTCCGCGGGC‑ATGGCCGTTCCCACAGGTTCACCATAGACCCCCGCTGAACGCAAGCCCTGgggg > 1:285959/1‑149 (MQ=255) ttcggagctgtccagaaaagcgatcaagcgatcgtccatgtcgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGTC‑TTGCCCGCTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGa > 3:218216‑M1/79‑149 (MQ=255) aaGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg > 1:25674/1‑144 (MQ=255) aaGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg < 2:25674/144‑1 (MQ=255) ggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCg < 3:64094‑M1/74‑1 (MQ=255) gcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCgg > 4:64094‑M1/75‑149 (MQ=255) gCCGAATAGCCCCGGCTGCTGGTGTGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCaa < 4:133612/148‑1 (MQ=255) gCCGAATAGCCCCGGCTGCTGGGGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCaa < 3:4646/148‑1 (MQ=255) tcgCCCCGGCTGCTGTGGGGGCTGTCTGTTCATTTCAGTTGAGCGCCACGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACCGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCcgcg < 6:280710/147‑1 (MQ=255) gaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg < 3:110499‑M1/68‑1 (MQ=255) gaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg < 3:273704‑M1/68‑1 (MQ=255) gaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg > 4:273704‑M1/65‑132 (MQ=255) gaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg > 4:110499‑M1/65‑132 (MQ=255) ccGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGaa > 3:177512/1‑113 (MQ=255) ctgGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCCGGCATGGCCCGTACCCCCCGGTACGGGTAAACCCACGCGGGAACGCAACCCCGGGGGGACCGGGC‑AGCCCCCCGAgggggcggcc > 4:105673/1‑143 (MQ=255) gtctgtTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCACGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCaa > 7:217746/1‑119 (MQ=255) gtctgtTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCACGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCaa < 8:217746/119‑1 (MQ=255) ccAAGC‑‑GGCCCCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCTGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaaaaa > 1:271196/1‑131 (MQ=255) | GTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGC‑‑GGGGGCCGCTTGGCGCCCCTCCGCGGGC‑TTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAA > NC_002947/2099815‑2100072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |