| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 1 (0.020) | 45 (0.830) +GCC |
41/250 | NT | 97.9% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 1 (0.020) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑G‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5555462‑5555749 | gCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggc < 6:121680‑M1/149‑3 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccc > 7:167025‑M1/1‑145 (MQ=255) gTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggcccc > 4:193979‑M1/1‑144 (MQ=255) cACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccgg > 1:242765‑M1/1‑142 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGAGCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccgg > 1:263893‑M1/1‑142 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttc > 3:21918‑M1/1‑135 (MQ=255) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccg > 2:249713‑M1/1‑133 (MQ=255) aaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgt > 7:19490‑M1/1‑130 (MQ=255) aTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGATCAACTCCTTTTCTCATCTGAAGCCGACAGCATAGCAACACCCCTCAGGTCTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggcccccgcaagatccgcgt > 1:353713‑M1/1‑129 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgt < 4:21918‑M1/149‑22 (MQ=255) gTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgc > 8:122073‑M1/1‑123 (MQ=255) cTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaac < 3:85179‑M1/149‑33 (MQ=255) ggCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttctgcgtgtatgcaacaaacctg < 8:167025‑M1/149‑36 (MQ=255) aGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgcta < 2:263893‑M1/148‑45 (MQ=255) gggCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcag < 7:122073‑M1/149‑50 (MQ=255) gggCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca < 4:241519‑M1/148‑49 (MQ=255) gggCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca < 3:193979‑M1/148‑49 (MQ=255) gggCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCG‑AAAGGGCCCCATAGC‑Ggcccccgcaatttccgcgtgtatgcaacaaacctggggctgctatggag > 5:117284‑M1/1‑100 (MQ=255) gCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcc > 8:79165‑M1/1‑98 (MQ=255) cgca‑CATGAGCACCACCCTTTGACCCGTGCCGCCGCCAGCATAGCACCCCGGCACAGGTGTGGGTGGGGCCTTGTGTCGCT‑AAAGGGCCGCATAGCTGCCCCGGCTATTTCCGCGTTTATGCAACAAACCTGGGGCTGCTATGCAGccc < 4:330780/146‑1 (MQ=255) a‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcccttt < 1:249713‑M1/149‑56 (MQ=255) a‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttcc > 4:185388‑M1/1‑94 (MQ=255) a‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttcc < 3:185388‑M1/109‑16 (MQ=255) cATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttc < 7:79165‑M1/149‑57 (MQ=255) cATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctgg > 8:48585‑M1/1‑93 (MQ=255) cATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctgg < 7:48585‑M1/129‑37 (MQ=255) tGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc < 8:19490‑M1/149‑59 (MQ=255) tGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc < 2:242765‑M1/149‑59 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc > 1:21141‑M1/1‑90 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttacgcgtgtatggaaaaaacctggggctgctatgcagccctttcgcg > 8:279055‑M1/1‑90 (MQ=255) aGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcga < 2:21141‑M1/149‑61 (MQ=255) aaCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgaca > 3:279577‑M1/1‑86 (MQ=255) ccTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgc > 3:66091‑M1/1‑82 (MQ=255) ccTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgc < 4:66091‑M1/107‑26 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccgg < 1:149278‑M1/88‑8 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccgg > 2:149278‑M1/1‑81 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgggtatgcaacaaacctggggctgatatgcagccctttcgcgacacaaggcccac > 1:285470‑M1/1‑76 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttacgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccaca > 5:100202‑M1/1‑75 (MQ=255) cAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggc < 7:279055‑M1/149‑89 (MQ=255) aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttca < 4:279577‑M1/149‑93 (MQ=255) gCAACACCGCTCAGGTGTGGGAGCTGCCTTGTGTCTCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggc < 5:267605‑M1/149‑96 (MQ=255) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCCTATC‑Ggcccccgcaatttccgcgtgtatgcaacaaacctggggcagctatgacgcccgtgagcgaccccaggcccacaaaggaccgcgcaggcgtcaggcc > 4:221879‑M1/1‑53 (MQ=255) tCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgccgccctttcgcgacacaaggcccacaaaggaccgcgcagg > 1:246763‑M1/1‑44 (MQ=255) gtgGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcg < 7:61626‑M1/121‑84 (MQ=255) ggAGCGGCCTTGTGTCGCG‑AATGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctg < 2:285470‑M1/149‑115 (MQ=255) ccTTGTGTCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcg > 5:337521‑M1/1‑28 (MQ=255) gtgtCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagct > 2:111714‑M1/1‑24 (MQ=255) tgtCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga < 7:133313‑M1/149‑127 (MQ=255) gtCGCG‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgag > 5:346784‑M1/1‑22 (MQ=255) cg‑AAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg > 4:120062‑M1/1‑18 (MQ=255) gggCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgc > 6:339827‑M1/1‑13 (MQ=255) ggCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatc < 3:221879‑M1/149‑138 (MQ=255) aTAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccag > 3:47958‑M1/1‑6 (MQ=255) | GCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGA‑CATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCATAGC‑G‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5555462‑5555749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |