New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6031197 =	50 (0.900)	5 (0.090)	4/244	NT	9.8%	coding (51/1590 nt)	dppA‑IV	dipeptide transport protein
	?	NC_002947	6031232 =	44 (0.830)					coding (86/1590 nt)	dppA‑IV	dipeptide transport protein

AAAAAAGGGTGTGGTCATTTGCCGGCGGGCGCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCTGGTGGAGTTCGATGCGGCGCAAGGC  >  NC_002947/6031053‑6031341                                                                                                                                                 |                                                                                                                                                  ccgtccagctggtcgccaggctcggcaccaccttgccttgcgccgcatcgaactccaccaggcggttcatcagcacgtcggcggtggcgttggtggtggtgagcgaattgtactggaccacgtcgaagccttcggggctggcctCGCTg                                                                                                                                               >  6:192427‑M1/145‑149 (MQ=255)        gctggtcgccaggctcggcaccaccttgccttgcgccgcatcgaactccaccaggcggttcatcagcacgtcggcggtggcgttggtggtggtgagcgaattgtactggaccacgtcgaagccttcggggctggcctCGCTGCCCAGGc                                                                                                                                        <  5:358092‑M1/12‑1 (MQ=255)                 aTTTGCCGGCGGGCGCACTAGGGTAAGCCTTTTCCAGCCTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACGTTCCTTATTGTTCCCCACCCTGTTCGCCGCTGGCGCTGCCCCGGccgctccgct                                                                                                                               >  6:196414/1‑149 (MQ=255)                 aTTTGCCGGCGGGCGCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGccgctccgct                                                                                                                               <  6:116317/149‑1 (MQ=255)                 aTTTGCCGGCGGGCGCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGccgctccgc                                                                                                                                <  5:332299/148‑1 (MQ=255)                   ttGCCGGCGGGCGCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGccgctccgct                                                                                                                               >  1:348955/1‑147 (MQ=255)                    tGCCGGCGGGCGCACTAGGTTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGa                                                                                                                             <  6:366860/148‑1 (MQ=255)                    tGCCGGCGGGCGCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTTGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGa                                                                                                                             <  5:281123/148‑1 (MQ=255)                        ggcgggcgCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGCGCGtt                                                                                                                        >  2:216470/1‑149 (MQ=255)                         gcgggcgCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGttt                                                                                                                       <  7:282696/149‑1 (MQ=255)                               gcACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGc                                                                                                                  >  6:360834/1‑148 (MQ=255)                                cttgccttgcgccgcatcgaactccaccaggcggttcatcagcacgtcggcggtggcgttggtggtggtgagcgaattgtactggaccacgtcgaagccttcggggctggcctCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGa                                                                                                                >  6:358092‑M1/114‑149 (MQ=255)                                 aCTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAg                                                                                                               <  3:119666/149‑1 (MQ=255)                                   tAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTAACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGc                                                                                                                                        >  5:57687/1‑122 (MQ=255)                                   tAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTAACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGc                                                                                                                                        <  6:57687/122‑1 (MQ=255)                                   gccttgcgccgcatcgaactccaccaggcggttcatcagcacgtcggcggtggcgttggtggtggtgagcgaattgtactggaccacgtcgaagccttcggggctggcctCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAg                                                                                                               >  7:24367‑M1/111‑147 (MQ=255)                                     gggTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGc                                                                                                             <  5:360834/147‑1 (MQ=255)                                                ttCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAg                                                                                                  <  2:348955/147‑1 (MQ=255)                                                   cAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTc                                                                                            >  7:330147/1‑149 (MQ=255)                                                   cAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTc                                                                                            >  5:83497/1‑149 (MQ=255)                                                   aactccaccaggcggttcatcagcacgtcggcggtggcgttggtggtggtgagcgaattgtactggaccacgtcgaagccttcggggctggcctCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAg                                                                                                               <  6:262881‑M1/37‑1 (MQ=255)                                                   aactccaccaggcggttcatcagcacgtcggcggtggcgttggtggtggtgagcgaattgtactggaccacgtcgaagccttcggggctggcctCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAg                                                                                                               >  5:262881‑M1/95‑131 (MQ=255)                                                     gACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGa                                                                                          <  8:193281/149‑1 (MQ=255)                                                            cTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTc                                                                                   <  6:141188/149‑1 (MQ=255)                                                            cTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTc                                                                                   <  6:135598/149‑1 (MQ=255)                                                               gCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTcc                                                                                  <  5:149932/147‑1 (MQ=255)                                                               gCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAg                                                                                >  5:349253/1‑149 (MQ=255)                                                                 aGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGt                                                                               >  7:64035/1‑148 (MQ=255)                                                                       gCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTc                                                                        >  7:213907/1‑149 (MQ=255)                                                                                aGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGc                                                                                                             >  4:153092/1‑104 (MQ=255)                                                                                aGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTcaccac                                                               >  4:247680/1‑149 (MQ=255)                                                                                aGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTcaccac                                                               >  2:250067/1‑149 (MQ=255)                                                                                  ccAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACg                                                                                        >  8:288252/1‑122 (MQ=255)                                                                                  ccAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACg                                                                                        <  7:288252/122‑1 (MQ=255)                                                                                          ccaccaTGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAGCGCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGc                                                      <  1:250067/149‑1 (MQ=255)                                                                                          ccaccaTGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTgg                                                                                     >  2:87870/1‑117 (MQ=255)                                                                                          ccaccaTGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTgg                                                                                     <  1:87870/117‑1 (MQ=255)                                                                                                tGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCAccgcc                                               <  6:83497/149‑1 (MQ=255)                                                                                                        gccgcACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCt                                       <  8:155907/149‑1 (MQ=255)                                                                                                         ccgcACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCt                                       >  2:192292/1‑148 (MQ=255)                                                                                                             aCTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCtgatga                                  <  3:247680/149‑1 (MQ=255)                                                                                                               tttCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAAc                                >  3:331566/1‑149 (MQ=255)                                                                                                                ttCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAAcc                               >  3:323942/1‑149 (MQ=255)                                                                                                                   cTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGcc                            <  8:330147/149‑1 (MQ=255)                                                                                                                   cTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGcc                            >  8:75423/1‑149 (MQ=255)                                                                                                                    ttATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCtgatg                                   <  6:109684/141‑1 (MQ=255)                                                                                                                    ttATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCtgatg                                   >  5:109684/1‑141 (MQ=255)                                                                                                                       ttGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCtgg                         <  8:64035/148‑1 (MQ=255)                                                                                                                         gTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCtggtg                       >  5:4357/1‑148 (MQ=255)                                                                                                                               caccCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCTGGTGGAGTTc                 >  7:196504/1‑148 (MQ=255)                                                                                                                               caccCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCTGGTGGAGTTc                 >  3:146696/1‑148 (MQ=255)                                                                                                                                    tGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTACAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCGCCACCCACGCCCCCGCCGCCGTGCTGATGAACCGGCGGGTGGGGGTCgcgggg           >  8:177102/1‑144 (MQ=255)                                                                                                                                     gTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCCCCACCAACGCCCCCGCCGACGTGCTGATGAACCGCCgggtg                       >  4:250567/1‑136 (MQ=255)                                                                                                                                     gTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCtggtg                       <  3:250567/136‑1 (MQ=255)                                                                                                                                      ttCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCTGGTGGAGTTCGATgcgg          <  4:331566/148‑1 (MQ=255)                                                                                                                                          ccgcTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTGCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCTGGTGGAGTTCGATGCGGCgcaa     <  5:196414/149‑1 (MQ=255)                                                                                                                                             cTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCTGGTGGAGTTCGATGCGGCgcaaggc  <  8:213907/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  AAAAAAGGGTGTGGTCATTTGCCGGCGGGCGCACTAGGGTAAGCCTTTTCCAGACTGCACTGGCAGATGGGCCACTGACAGCCAAGGAGCCACCATGCGTGTCGCCGCACTTTCCTTATTGTTCACCACCCTGTTCGCCGCTGGCGCTGCCCAGGCCGCTCCGCTGAGCGTTTGCAGCGAGGCCAGCCCCGAAG‑GCTTCGACGTGGTCCAGTACAATTCGCTCACCACCACCAACGCCACCGCCGACGTGCTGATGAACCGCCTGGTGGAGTTCGATGCGGCGCAAGGC  >  NC_002947/6031053‑6031341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.