New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2745303	57 (1.030)	5 (0.090)	5/248	NT	9.3%	coding (378/489 nt)	PP_2400	hypothetical protein
	?	NC_002947	= 2745362	42 (0.780)					coding (319/489 nt)	PP_2400	hypothetical protein

CCAATGATCGAGGCTAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACATCGACAGCTGCCAGTTCAGCTCCGCGGGCAGCAGG  >  NC_002947/2745216‑2745510                                                                                                                                                   |                                                                                                                                                     ccAATGATCGAGGCTAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCcg                                                                                                                                                    >  7:107662‑M2/1‑147 (MQ=255)        tCGAGGCTAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGt                                                                                                                                              <  3:240437/148‑1 (MQ=255)        tCGAGGCTAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTg                                                                                                                                             >  3:290229/1‑149 (MQ=255)            ggCTAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACt                                                                                                                                         <  5:257724/149‑1 (MQ=255)               tAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTg                                                                                                                                             <  1:240787/142‑1 (MQ=255)               tAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTg                                                                                                                                             >  2:240787/1‑142 (MQ=255)               tAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGc                                                                                                                                       >  4:98486/1‑148 (MQ=255)               tAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGc                                                                                                                                       >  1:147027/1‑148 (MQ=255)                  ggcgcccggcgcccTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCAc                                                                                                                                    >  5:69680/1‑148 (MQ=255)                     gcccggcgcccTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATc                                                                                                                                <  3:327316/149‑1 (MQ=255)                         ggcgcccTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTa                                                                                                                            >  5:24792/1‑149 (MQ=255)                              ccTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACg                                                                                                                       <  2:290040/149‑1 (MQ=255)                              ccTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGACTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACg                                                                                                                       >  4:213097/1‑149 (MQ=255)                                     cagcagTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGGcacca                                                                                                                <  8:260076/149‑1 (MQ=255)                                        cagTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTcac                                                                                                                  <  1:155181/144‑1 (MQ=255)                                        cagTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTcac                                                                                                                  >  2:155181/1‑144 (MQ=255)                                        cagTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCAccacca                                                                                                             <  6:69680/149‑1 (MQ=255)                                                  aaCGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATTGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCaa                                                                                                   <  3:46314/149‑1 (MQ=255)                                                  aaCGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCaa                                                                                                   <  5:77357/149‑1 (MQ=255)                                                  aaCGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCaa                                                                                                   <  5:340521/149‑1 (MQ=255)                                                                gATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCgg                                                                                      <  3:98486/148‑1 (MQ=255)                                                                  tCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTa                                                                                   <  6:24792/149‑1 (MQ=255)                                                                    aGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTAcc                                                                                 >  7:164893/1‑149 (MQ=255)                                                                         ccccTTGTACTCGCCGAACCCCCCGGCGGCAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGGCACCACCATCAACCCCAATGATGCCAGCCGGGTACCCAGGc                                                                            <  4:290229/146‑1 (MQ=255)                                                                           aCTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGcc                                                                           >  2:280283/1‑148 (MQ=255)                                                                             ttGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGcc                                                                                        >  6:262683/1‑133 (MQ=255)                                                                             ttGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGcc                                                                                        <  5:262683/133‑1 (MQ=255)                                                                               gTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTAccc                                                                                <  5:65022/139‑1 (MQ=255)                                                                               gTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTAccc                                                                                >  6:65022/1‑139 (MQ=255)                                                                               gTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAg                                                                        <  2:186275/147‑1 (MQ=255)                                                                                   ttGCCGAAGCCCTGGTCGGTAATGGCATAGCCATGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCcggcaattacaagttgccgctgatctacctggtggcgttgctgccactgctgctcaagggcgccgggcgccttagcctcgatca                                                                  <  1:224266‑M2/149‑85 (MQ=255)                                                                                      ccGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCcggcaattacaagttgccgctgatctacctggtggcgttgctgccactgctgctcaagggcgccgggcgc                                                                                >  7:38650‑M2/1‑62 (MQ=255)                                                                                      ccGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCcggcaattacaagttgccgctgatctacctggtggcgttgctgccactgctgctcaagggcgccgggcgc                                                                                <  8:38650‑M2/132‑71 (MQ=255)                                                                                      ccGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAAcagca                                                                <  2:147027/148‑1 (MQ=255)                                                                                       cGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCTTcggcaattacaagttgccgctgatctacctggtggcgttgctgccactgctgctcaagggcgccgggcgccttagcctcgatcattgg                                                              <  2:346302‑M2/149‑89 (MQ=255)                                                                                        gAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACagcagc                                                              >  2:59238/1‑148 (MQ=255)                                                                                              cTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACgg                                                         >  1:309115/1‑147 (MQ=255)                                                                                                  tCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTAc                                                   <  2:309115/149‑1 (MQ=255)                                                                                                      tAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGcc                                                                           <  8:290476/121‑1 (MQ=255)                                                                                                      tAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGcc                                                                           >  7:290476/1‑121 (MQ=255)                                                                                                                 ccTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAAca                                                                   >  3:106896/1‑118 (MQ=255)                                                                                                                 ccTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAAca                                                                   <  4:106896/118‑1 (MQ=255)                                                                                                                 ccTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACAt                                    >  7:253135/1‑149 (MQ=255)                                                                                                                  cTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACATc                                   >  7:336477/1‑149 (MQ=255)                                                                                                                      ggCCAGTTCCGCCAGGCCCGACCAGTGCTTcggcaattacaagttgccgctgatctacctggtggcgttgctgccactgctgctcaagggcgccgggcgccttagcctcgatcattggctgagcatgcggttcggcagatgaggatcgg                               >  1:346302‑M2/1‑30 (MQ=255)                                                                                                                       gCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAattat                                                                                               <  3:118333/84‑1 (MQ=255)                                                                                                                       gCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAatgat                                                                                               >  4:118333/1‑84 (MQ=255)                                                                                                                        ccAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACATCGACAGc                             >  7:277392/1‑149 (MQ=255)                                                                                                                         cAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACATCGACAGCt                            <  3:213097/149‑1 (MQ=255)                                                                                                                                gCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCgg                                           >  3:53122/1‑127 (MQ=255)                                                                                                                                gCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCgg                                           <  4:53122/127‑1 (MQ=255)                                                                                                                                           ccAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACATCGACAGCTGCCAGTTCAGCTCCGCgg          >  6:327407/1‑149 (MQ=255)                                                                                                                                                 cgcCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACAt                                    >  4:217510/1‑117 (MQ=255)                                                                                                                                                 cgcCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACAt                                    <  3:217510/117‑1 (MQ=255)                                                                                                                                                   ccGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACATCGACAGCTGCCAGTTCAGCTCCGCGGGCAGCAgg  <  1:280283/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CCAATGATCGAGGCTAAGGCGCCCGGCGCCCTTGAGCAGCAGTGGCAGCAACGCCACCAGGTAGATCAGCGGCAACTTGTAATTGCCGAAGCCCTGGTCGGTAATGGCATAGCCTTGGGCCAGTTCCGCCAGGCCCGACCAGTGCGCCGGCCAGTGCACTGCCACTATCGCTACAACGGTCACCACCATCAAACCCAATGATGCCAGCCGGGTACCCAGGCCCAGCAACAGCAGCAACGGCAGTACCAACTCGGCCCACATCGACAGCTGCCAGTTCAGCTCCGCGGGCAGCAGG  >  NC_002947/2745216‑2745510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.