New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2806817 =	51 (0.920)	3 (0.060)	3/238	NT	6.2%	coding (191/969 nt)	Nuh	ribonucleoside hydrolase
	?	NC_002947	2806869 =	44 (0.860)					coding (243/969 nt)	Nuh	ribonucleoside hydrolase

CCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGGCGCAGCCGAACCACA  >  NC_002947/2806730‑2807009                                                                                                                                            |                                                                                                                                              cccACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACg                                                                                                                                      >  5:50182/1‑149 (MQ=255)       aaCTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGACTGGCCCGCGAATGGGAGGGGCGTGAAGACATAACGGTGTACGCAGGTGCCGGCCGCCCATTGGTGCGCACGCAGAt                                                                                                                                 >  8:122832/1‑148 (MQ=255)           cAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTAcg                                                                                                                            >  2:273707/1‑149 (MQ=255)            aGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTAcgc                                                                                                                           >  1:226476/1‑149 (MQ=255)                 gctcgtgcacctgtacgccggtgaggccttcttcgccatgaacgtcggcggcgtagatcggcgtgcgcaccAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTg                                                                                                                                            <  5:310008‑M1/56‑1 (MQ=255)                 gctcgtgcacctgtacgccggtgaggccttcttcgccatgaacgtcggcggcgtagatcggcgtgcgcaccAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTg                                                                                                                                            >  6:310008‑M1/72‑127 (MQ=255)                  cgcgCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGa                                                                                                                     >  8:208265/1‑149 (MQ=255)                   gcgcCATCACCACCGTGGCCGGCAACGTTCGCCTGGACACGACCTCGCGCAATGCCCGCCTGGCCAGCGAATGGGCGGGGCGAGAAGACATCCCGGTGTCCGCTGGTGCCGGCCGCGCATTGGTGCGCACGCCGATCTACGCCTCAGAc                                                                                                                    >  3:197423/1‑149 (MQ=255)                       cATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGtt                                                                                                                 >  5:162984/1‑148 (MQ=255)                           accaccGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATg                                                                                                             <  8:327609/148‑1 (MQ=255)                           accaccGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATg                                                                                                             <  5:207558/148‑1 (MQ=255)                            ccaccGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGc                                                                                                           >  7:164678/1‑149 (MQ=255)                                       ggCAACGTTCGCCTGGACAAGACCTCGCGCTATGCCGGCCTGGCCCGCGAATGTGCGGGGCGTGAAGACATCCCGGTGTACGCTGTTGCCGGCCGCGCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCt                                                                                                <  7:122832/149‑1 (MQ=255)                                        gCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATc                                                                                                                                <  3:223579/116‑1 (MQ=255)                                        gCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATc                                                                                                                                >  4:223579/1‑116 (MQ=255)                                                      gACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAg                                                                                   <  7:221597/147‑1 (MQ=255)                                                       aCAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCCGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGATGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTg                                                                                >  3:188025/1‑149 (MQ=255)                                                         aaGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCa                                                                              >  7:130797/1‑149 (MQ=255)                                                           gACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑Cg                                                                           <  6:162984/149‑1 (MQ=255)                                                                cgcgCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCAt                                                                                                              >  4:145065/1‑110 (MQ=255)                                                                 gcgcAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGc                                                                                         >  8:108681/1‑130 (MQ=255)                                                                 gcgcAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGc                                                                                         <  7:108681/130‑1 (MQ=255)                                                                 gcgcAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCg                                                                      >  3:123807/1‑148 (MQ=255)                                                                 gcgcAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGATGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCAACGCCGCCGACGTTATTGGTGAAGAAGGCCTCACCGGAGTACAGGTGCC‑CGAGCCg                                                                      >  8:335670/1‑148 (MQ=255)                                                                       tGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAgcgc                                                               <  7:208265/149‑1 (MQ=255)                                                                          ccGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGcccc                                                            >  7:50106/1‑149 (MQ=255)                                                                            gCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACTCCGCCGACGTTCATGTCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTg                                                          <  6:50182/149‑1 (MQ=255)                                                                             ccTGGCCCGCGACTGGGCGGGGCGGGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTAAAGGTGCA‑CGAGCCGAAAGCGCCCCTgg                                                         <  7:297370/149‑1 (MQ=255)                                                                              cTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGc                                                                        <  3:203717/133‑1 (MQ=255)                                                                              cTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGc                                                                        >  4:203717/1‑133 (MQ=255)                                                                                ggCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGcc                                                       >  8:228774/1‑148 (MQ=255)                                                                                  cccGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAg                                                    >  4:128169/1‑149 (MQ=255)                                                                                    cgcgAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATg                                                                                                             >  8:250877/1‑91 (MQ=255)                                                                                    cgcgAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATg                                                                                                             <  7:250877/91‑1 (MQ=255)                                                                                    cgcgAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCGCCTGGCCCAggg                                                  >  5:306517/1‑149 (MQ=255)                                                                                    caccaatgggcggccggcaccagcgtacaccgggatgtcttcacgccccgcccattGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGc                                                                        >  6:310008‑M2/57‑127 (MQ=255)                                                                                    caccaatgggcggccggcaccagcgtacaccgggatgtcttcacgccccgcccattGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGc                                                                        <  5:310008‑M2/71‑1 (MQ=255)                                                                                       gAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCCGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGATGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCaa                                               <  4:188025/149‑1 (MQ=255)                                                                                          TGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGc                                            >  7:228774‑M1/1‑149 (MQ=255)                                                                                            GGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGcc                                           >  2:226476‑M1/1‑148 (MQ=255)                                                                                              gGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTg                                        >  7:335670‑M1/2‑149 (MQ=255)                                                                                              cggccggcaccagcgtacaccgggatgtcttcacgccccgcccattGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTg                                        >  7:219452‑M2/47‑149 (MQ=255)                                                                                              CGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTg                                        >  2:296873‑M1/1‑149 (MQ=255)                                                                                                     tGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAAt                                    >  5:282694/1‑146 (MQ=255)                                                                                                     tGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAAt                                    <  6:282694/146‑1 (MQ=255)                                                                                                        aGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTgg                              <  8:164678/149‑1 (MQ=255)                                                                                                          aCATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGTCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTc                            <  4:123807/149‑1 (MQ=255)                                                                                                          aCATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCaa                                               <  6:82319/130‑1 (MQ=255)                                                                                                          aCATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCaa                                               >  5:82319/1‑130 (MQ=255)                                                                                                          aCATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTc                            <  3:128169/149‑1 (MQ=255)                                                                                                              cccGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTc                            >  5:133964/1‑145 (MQ=255)                                                                                                              cccGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTc                            <  6:133964/145‑1 (MQ=255)                                                                                                                 ggTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCACCGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATAcc                      <  1:273707/149‑1 (MQ=255)                                                                                                                                  gccgccCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAgc                                                                 >  6:251500/1‑88 (MQ=255)                                                                                                                                  gccgccCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAgc                                                                 <  5:251500/88‑1 (MQ=255)                                                                                                                                  gccgccCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTc                            >  4:116187/1‑125 (MQ=255)                                                                                                                                  gccgccCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTc                            <  3:116187/125‑1 (MQ=255)                                                                                                                                   ccgcccattGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGa                          <  7:190395‑M2/117‑1 (MQ=255)                                                                                                                                   ccgcccattGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGa                          >  8:190395‑M2/10‑126 (MQ=255)                                                                                                                                    cgcccattGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGGCGCAGCCGAACcaca  >  7:307323‑M2/9‑149 (MQ=255)                                                                                                                                            |                                                                                                                                              CCCACGAACTCAGTATCCGCGCCATCACCACCGTGGCCGGCAACGTTCGCCTGGACAAGACCTCGCGCAATGCCCGCCTGGCCCGCGAATGGGCGGGGCGTGAAGACATCCCGGTGTACGCTGGTGCCGGCCGCCCATTGGTGCGCACGCCGATCTACGCCGCCGACGTTCATGGCGAAGAAGGCCTCACCGGCGTACAGGTGCA‑CGAGCCGAAAGCGCCCCTGGCCCAGGGCAATGCCGTGCAATACCTGGTCGATACCCTCGGCGCAGCCGAACCACA  >  NC_002947/2806730‑2807009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.