New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4345579	45 (0.810)	3 (0.060)	3/248	NT	6.2%	coding (1155/1308 nt)	PP_3818	phosphate‑binding protein
	?	NC_002947	= 4345626	47 (0.880)					coding (1202/1308 nt)	PP_3818	phosphate‑binding protein

GTGACAGAGTACCTGCGCCAGGCCGGGAAGCTGCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGTGACGGTGCGCATGGTCACGAACTCTTC  >  NC_002947/4345478‑4345771                                                                                                                                                     |                                                                                                                                                  gTGACAGAGTACCTGCGCCAGGCCGGGAAGCTGCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGt                                                                                                                                                   <  1:88063/149‑1 (MQ=255)      agagTACCTGCGCCAGGCCGGGAAGCTGCAGGGCAACGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGCTGCCGTgcagg                                                                                                                                              <  3:56493‑M2/149‑6 (MQ=255)       gagTACCTGCGCCAGGCCGGGAAGCTGCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGgt                                                                                                                                             <  5:99135/149‑1 (MQ=255)                cgcCAGGCCGGGAAGCTGCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAgg                                                                                                                                     <  8:213/148‑1 (MQ=255)                cgcCAGGCCGGGAAGCTGCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAg                                                                                                                                      <  1:251766/147‑1 (MQ=255)                                 gCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCa                                                                                                                                       >  8:253078/1‑129 (MQ=255)                                 gCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCa                                                                                                                                       <  7:253078/129‑1 (MQ=255)                                     ggCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAAc                                                                                                                >  4:214397/1‑148 (MQ=255)                                     ggCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACt                                                                                                               <  6:91110/149‑1 (MQ=255)                                        aaGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATTAACTAc                                                                                                             >  2:244309/1‑148 (MQ=255)                                         aGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCa                                                                                                           <  2:101882/149‑1 (MQ=255)                                             aGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGAt                                                                                                                    <  7:127325/136‑1 (MQ=255)                                             aGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGAt                                                                                                                    >  8:127325/1‑136 (MQ=255)                                              gTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTAc                                                                                                             <  6:222730/142‑1 (MQ=255)                                              gTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTAc                                                                                                             >  5:222730/1‑142 (MQ=255)                                                  tggtggGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCgg                                                                                                   >  2:72693/1‑148 (MQ=255)                                                             ggCGACCCAAAGGAAAGCCCTGGGCGCGCAGCCCTGCTCTCGCGCGTACGTGCGCAAGCGGTGGGCCGCGAACTGGCGCGCGTTGGCGTGGAGGTGTTGCAGGTGAGCGGGATGGGCGATGAACTACGAGTGGGCGGGAATGAACTGGa                                                                                       <  4:56493/149‑1 (MQ=255)                                                             ggCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTACCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGa                                                                                       <  2:269111/149‑1 (MQ=255)                                                              gCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATTAACTACCAGTGGCCGGGAATGAACTGGAg                                                                                      <  1:244309/149‑1 (MQ=255)                                                               cGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGc                                                                                     <  6:145503/149‑1 (MQ=255)                                                                 aCCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCTCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCTCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCaa                                                                                   <  3:145115/149‑1 (MQ=255)                                                                   ccAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAgg                                                                                 >  1:341767/1‑149 (MQ=255)                                                                    cAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGc                                                                                <  5:246452/149‑1 (MQ=255)                                                                     aaaGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGGGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCTAGGcc                                                                               >  8:104937/1‑149 (MQ=255)                                                                         gAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAAc                                                                                                                >  2:48860/1‑112 (MQ=255)                                                                              cccTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGa                                                                                       <  5:102094/132‑1 (MQ=255)                                                                              cccTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGa                                                                                       >  6:102094/1‑132 (MQ=255)                                                                              cccTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTgcgc                                                                       >  8:11610/1‑148 (MQ=255)                                                                              cccTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCa                                                                      >  7:81311/1‑149 (MQ=255)                                                                                            cccTGCACTCCCGCCTACGTGCGCAAGCGGTGCGCAGCGAACTGGCGCGCGGTGGCCTGCAGGAGTTGCACGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAAATGGACAAAGGCCGGCTGCGCACCCGGCGGGTCGAg                                                        >  2:286059/1‑149 (MQ=255)                                                                                              cTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTgga                                                                                                                                                <  7:147803‑M2/59‑4 (MQ=255)                                                                                              cTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTgga                                                                                                                                                >  8:147803‑M2/1‑56 (MQ=255)                                                                                                   ctcCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTggagagcagggctgcgcgcccaggggtttcctttgggtcgccgaaccccaccagcactgccttgccctgcagcttcccggcct                                                                <  4:74725‑M2/134‑84 (MQ=255)                                                                                                   ctcCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTggagagcagggctgcgcgcccaggggtttcctttgggtcgccgaaccccaccagcactgccttgccctgcagcttcccggcct                                                                >  3:74725‑M2/1‑51 (MQ=255)                                                                                                    tcCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTggagagcagggctgcgcgcccaggggtttcctttgggtcgccgaaccccacccgcactgccttgccctgcagcttcccggcctggcgcaggtactctgt                                                <  5:290077‑M2/149‑100 (MQ=255)                                                                                                    tcCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACTGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCggg                                                             >  4:304465/1‑136 (MQ=255)                                                                                                    tcCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACTGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCggg                                                             <  3:304465/136‑1 (MQ=255)                                                                                                    tcCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAAc                                                                                           <  2:51216/106‑1 (MQ=255)                                                                                                    tcCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAAc                                                                                           >  1:51216/1‑106 (MQ=255)                                                                                                      ccGCATACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGAGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGACGGCTGCGCAACCGGCGGGTCGAGGTGTGGgtg                                               >  2:210274/1‑148 (MQ=255)                                                                                                        gCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTAt                                            <  3:214397/149‑1 (MQ=255)                                                                                                          cTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTgg                                                                                        >  6:59051/1‑103 (MQ=255)                                                                                                          cTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTgg                                                                                        <  5:59051/103‑1 (MQ=255)                                                                                                                gcgcAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGa                                                                                                 >  8:21276/1‑88 (MQ=255)                                                                                                                gcgcAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGa                                                                                                 <  7:21276/88‑1 (MQ=255)                                                                                                                 cgcAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGatcat                                     >  7:19188/1‑147 (MQ=255)                                                                                                                    aaGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCg                                >  1:310079/1‑149 (MQ=255)                                                                                                                      gCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCggg                              <  5:177368/149‑1 (MQ=255)                                                                                                                       cGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGt                             <  1:72693/149‑1 (MQ=255)                                                                                                                                gcgAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGt                                                            >  7:312354/1‑109 (MQ=255)                                                                                                                                gcgAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGt                                                            <  8:312354/109‑1 (MQ=255)                                                                                                                                      tGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCg                                <  6:133765/131‑1 (MQ=255)                                                                                                                                          gcgcgGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACt                                                                                          <  7:325296/69‑1 (MQ=255)                                                                                                                                          gcgcgGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACt                                                                                          >  8:325296/1‑69 (MQ=255)                                                                                                                                              ggTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGTGACGGTGCGCATGGTCACGAAct      >  4:103300/1‑149 (MQ=255)                                                                                                                                                  gCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGTGACGGTGCGCATGGTCACGAACTCTTc  <  7:11610/149‑1 (MQ=255)                                                                                                                                                  gCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGTGACGGTGCGCATGGTCACGAACTCTTc  <  3:103300/149‑1 (MQ=255)                                                                                                                                                    gTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGTGACGGTGCGCATGGTCACGAACTCTTc  <  8:145841/147‑1 (MQ=255)                                                                                                                                                    gTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGTGACGGTGCGCATGGTCACGAACTCTTc  >  7:145841/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GTGACAGAGTACCTGCGCCAGGCCGGGAAGCTGCAGGGCAAGGCAGTGCTGGTGGGGTTCGGCGACCCAAAGGAAACCCCTGGGCGCGCAGCCCTGCTCTCCCGCCTACGTGCGCAAGCGGTGCGCCGCGAACTGGCGCGCGGTGGCGTGGAGGTGTTGCAGGTGACCGGGATGGGCGATGAACTACCAGTGGCCGGGAATGAACTGGAGCAAGGCCGGCTGCGCAACCGGCGGGTCGAGGTGTGGGTGTATTGATCATCAGCGGGTGACGGTGCGCATGGTCACGAACTCTTC  >  NC_002947/4345478‑4345771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.