New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4725720	63 (1.140)	3 (0.060)	3/240	NT	5.6%	coding (113/750 nt)	PP_4183	membrane protein
	?	NC_002947	= 4725792	42 (0.810)					coding (41/750 nt)	PP_4183	membrane protein

ATCGGCGATGCGGTTGTCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCG  >  NC_002947/4725647‑4725939                                                                                                                                                  |                                                                                                                                                    aTCGGCGATGCGGTTGTCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGAtgg                                                                                                                                                  <  3:214362‑M2/149‑4 (MQ=255)  tCGGCGATGCGGTTGTCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGAtggc                                                                                                                                                 <  7:338803‑M2/149‑5 (MQ=255)         tGCGGTTGTCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAgg                                                                                                                                          <  7:122416/149‑1 (MQ=255)          gaggTTGTCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAgg                                                                                                                                          <  8:129867/146‑1 (MQ=255)                 tCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAg                                                                                                                                  >  4:25589/1‑149 (MQ=255)                 tCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAg                                                                                                                                  >  2:199798/1‑149 (MQ=255)                        gcagcaTGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCtt                                                                                                                           <  8:338803/149‑1 (MQ=255)                         cagcaTGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCttt                                                                                                                          <  1:145143/149‑1 (MQ=255)                          agcaTGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTg                                                                                                                         <  4:214362/149‑1 (MQ=255)                              tGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGAt                                                                                                                      >  3:134522/1‑148 (MQ=255)                                 ggcgCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAg                                                                                                                  <  3:25589/149‑1 (MQ=255)                                         cAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATg                                                                                                            <  5:44211/147‑1 (MQ=255)                                         cAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATg                                                                                                            >  6:44211/1‑147 (MQ=255)                                          aGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGTTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAg                                                                                                         <  1:10665/149‑1 (MQ=255)                                          aGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAg                                                                                                         >  1:197213/1‑149 (MQ=255)                                           gTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAgg                                                                                                        >  1:177398/1‑149 (MQ=255)                                           gTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGNTGAGGTTGCTTTGGATGAAGTTCATGCAgg                                                                                                        <  1:32686/149‑1 (MQ=255)                                              ttCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAg                                                                                                                  >  2:325285/1‑136 (MQ=255)                                              ttCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAg                                                                                                                  <  1:325285/136‑1 (MQ=255)                                              ttCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGt                                                                                                      >  2:21310/1‑148 (MQ=255)                                              ttCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGt                                                                                                      >  4:143355/1‑148 (MQ=255)                                              ttCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGt                                                                                                      >  8:124449/1‑148 (MQ=255)                                                 gcgGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTAcc                                                                                                  <  4:134522/149‑1 (MQ=255)                                                     tACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCCGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGa                                                                                                >  3:201691/1‑147 (MQ=255)                                                      aCAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGgttgtt                                                                                                                                     <  1:265580/109‑1 (MQ=255)                                                      aCAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGgttgtt                                                                                                                                     >  2:265580/1‑109 (MQ=255)                                                       cAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAgg                                                                                            <  2:177398/149‑1 (MQ=255)                                                              agcaCGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCCCCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCAtgt                                                                                     >  7:234167/1‑149 (MQ=255)                                                                 aCGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGAtggccagcgtgctgcacttgtaccgcgaagactggatgcgccgcatgctgc                                                                                                  <  1:88534‑M2/133‑52 (MQ=255)                                                                 aCGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGAtggccagcgtgctgcacttgtaccgcgaagactggatgcgccgcatgctgc                                                                                                  >  2:88534‑M2/1‑82 (MQ=255)                                                                     tGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGAtggccagcgtgctgcacttgtaccgcgaagactggatgcgccgcatgctgctgcgcgacaaccgcatcgcc                                                                              <  6:257762‑M2/149‑72 (MQ=255)                                                                       gCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAg                                                                             >  2:121075/1‑148 (MQ=255)                                                                                gcgGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATATGGAcc                                                                   >  5:47976/1‑149 (MQ=255)                                                                                        gcgcCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTc                                                            >  7:177454/1‑148 (MQ=255)                                                                                         cgcCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGa                                                          <  2:197213/149‑1 (MQ=255)                                                                                          gcCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGAc                                                         <  1:121075/149‑1 (MQ=255)                                                                                                    gATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGa                                                                                                                                                     <  4:8827/47‑1 (MQ=255)                                                                                                    gATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGa                                                                                                                                                     >  3:8827/1‑47 (MQ=255)                                                                                                          aTAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCGGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCt                                                      >  4:127181/1‑136 (MQ=255)                                                                                                          aTAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCGGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCt                                                      <  3:127181/136‑1 (MQ=255)                                                                                                                      gCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGc                             <  7:124449/149‑1 (MQ=255)                                                                                                                         aCCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGTAGGGTTACCGAAAGGGCCAt                                                                                       >  5:367413/1‑88 (MQ=255)                                                                                                                         aCCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGTAGGGTTACCGAAAGGGCCAt                                                                                       <  6:367413/88‑1 (MQ=255)                                                                                                                           cccAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGAGCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACt                        >  3:300916/1‑149 (MQ=255)                                                                                                                                    gggCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCTAAAGGCACACCTGCACACTGAAAAATGc               <  1:199798/149‑1 (MQ=255)                                                                                                                                     ggCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGc               >  2:5181/1‑148 (MQ=255)                                                                                                                                     ggCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCa              >  7:91016/1‑149 (MQ=255)                                                                                                                                          aCCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGca                                    <  4:164911/122‑1 (MQ=255)                                                                                                                                          aCCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGca                                    >  3:164911/1‑122 (MQ=255)                                                                                                                                             aGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTaaa                                                                              >  4:254183/1‑77 (MQ=255)                                                                                                                                             aGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTaaa                                                                              <  3:254183/77‑1 (MQ=255)                                                                                                                                                 gATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCg  <  8:91016/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    ATCGGCGATGCGGTTGTCGCGCAGCAGCATGCGGCGCATCCAGTCTTCGCGGTACAAGTGCAGCACGCTGGCCAGGCACGCGGTGTCGCGCCCCTTCCAGATCGCATAGCGGGTATAGCCACCCCAGCACAGGGCGAACCAGGCGATGGCCAGCAGGTTGTTGAGGTTGCTTTGGATGAAGTTCATGCAGGGTTACCGAAAGGGCCATGTGCCTAAAGGATAGGGACCGGATTTCGACGCTGGCAAGCGGCAAAAGGCACACCTGCACACTGAAAAATGCATTACCTGCTGCG  >  NC_002947/4725647‑4725939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.