New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4896398	25 (0.450)	5 (0.110)	5/214	NT	17.3%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896445	27 (0.580)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein

CCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACC  >  NC_002947/4896306‑4896592                                                                                                                                            |                                                                                                                                                    cccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACACGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgc                                                                                                                                            >  5:258600‑M2/1‑140 (MQ=255)  ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgc                                                                                                                                            <  1:258375‑M2/148‑10 (MQ=255)  ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgc                                                                                                                                            <  2:338718‑M2/148‑10 (MQ=255)  ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgc                                                                                                                                            >  2:258375‑M2/1‑139 (MQ=255)    ccGAGCAGGGGGCGGCGTGCTGTTCTCGCTGTGGGCATGGGTTGTTTCCCACAGCGTGATAGCGCCGGCGCCGGCCTCTTCGCGGGTAAATCCGCGCCTCCAGGCGCGGACCGGGCGCGGGCCCCCGTAGGAGCGGGTGTACCCGCGaa                                                                                                                                         <  6:201899/148‑1 (MQ=255)    aCGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaa                                                                                                                                         >  1:338718‑M2/1‑137 (MQ=255)     cGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTCGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaag                                                                                                                                        >  7:275409‑M2/1‑136 (MQ=255)           gggggCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaagaggc                                                                                                                                    <  8:25492‑M2/147‑18 (MQ=255)           gggggCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaagaggc                                                                                                                                    >  7:25492‑M2/1‑130 (MQ=255)                                 tgtgGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCACATAGAGCGTTAATCCCCTGCTACCCGCGCGGCACGGGCGCGGGGCCCCGGATGCACAGGTTTACCCCCGAAACCGCCCGAAAAGGCCGAAGCAAAACCa                                                                                                             >  8:195937/1‑148 (MQ=255)                                                  tCCCAAAGCGTGATAGCTCCTGCGCCGTCATCTTCGCGGTTAAATCCGCTCCTACAGGCGCGGACCGTGCTCGGTCCCCCGTAGGAGCGGGTTTACGCGCTAAGTGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCtt                                                                                            <  7:195937/148‑1 (MQ=255)                                                    ccAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTa                                                                                          <  1:221713/148‑1 (MQ=255)                                                      aaaGCGTGATAGCGCCTGCGCCGGCCTCTTAGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCCGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAcc                                                                                       >  2:53119/1‑149 (MQ=255)                                                             gATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttttt                                                                                                  <  1:235036/131‑1 (MQ=255)                                                             gATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCACCTACAGGCCCGGACCGTTCGCGGTCCCCCCTACGAGCGGGTTTACCCGCGAACAGGCCGGCACAGGCAGAAGCATAACCCAAGCAtatttt                                                                                                  >  2:235036/1‑131 (MQ=37)                                                             gATAGCGCCGGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAg                                                                                                                        <  3:290858/109‑1 (MQ=255)                                                                               ctctTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaac                                                                                                      >  6:134694‑M2/1‑62 (MQ=255)                                                                               ctctTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaac                                                                                                      <  5:134694‑M2/109‑48 (MQ=255)                                                                                     gcgGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGc                                                         >  5:1843/1‑148 (MQ=255)                                                                                         gTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGAGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCt                                                    >  5:188954/1‑149 (MQ=255)                                                                                                 gCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagcacagaacgccgccccctgctcgtgggtcttcttgtgg                                             <  4:43867‑M2/148‑105 (MQ=255)                                                                                                   tCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccaca                                                                                        >  6:7384‑M2/1‑42 (MQ=255)                                                                                                   tCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccaca                                                                                        <  5:7384‑M2/103‑62 (MQ=255)                                                                                                   ctgttgaGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAacac                                          <  6:288445/143‑1 (MQ=255)                                                                                                     cTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCt                                                    <  8:22557/137‑1 (MQ=255)                                                                                                     cTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCt                                                    >  7:22557/1‑137 (MQ=255)                                                                                                      tACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCaa                                                       <  1:232916/133‑1 (MQ=255)                                                                                                      tACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCaa                                                       >  2:232916/1‑133 (MQ=255)                                                                                                      tACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt                                       >  2:244121/1‑149 (MQ=255)                                                                                                       aCAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCg                                                              >  1:157446/1‑125 (MQ=255)                                                                                                       aCAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCg                                                              <  2:157446/125‑1 (MQ=255)                                                                                                        cAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCtt                                      <  1:244121/148‑1 (MQ=255)                                                                                                         aGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAGCCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTc                                     >  5:10531/1‑148 (MQ=255)                                                                                                         aGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTc                                     >  2:347323/1‑148 (MQ=255)                                                                                                           gcgcGGACCGTGCGCGTTCCCCCGTTGGAGTGGGTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAg                                  <  5:4495/149‑1 (MQ=255)                                                                                                                  ccGTGCGCGGTCCCCCGTAGGAGCGGGTTAACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAg                            >  1:26320/1‑148 (MQ=255)                                                                                                                       cgcgGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAACCCCACCCGTTATAGTCGCTGGCAATCTGCCCCCACACGCTTCAAGAACAAGGACGc                       >  5:262076/1‑148 (MQ=255)                                                                                                                         cgGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAAc                    >  7:159023/1‑149 (MQ=255)                                                                                                                              ccccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGa                >  6:69834/1‑148 (MQ=255)                                                                                                                               cccGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGaaa              <  1:53119/149‑1 (MQ=255)                                                                                                                                      gAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAaccc                                                                            <  4:133761/80‑1 (MQ=255)                                                                                                                                        gCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaatcaagctgcagctgctccccacgcatcc     <  5:197509‑M2/149‑145 (MQ=255)                                                                                                                                        gCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCtt      >  1:66/1‑148 (MQ=255)                                                                                                                                         cGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCa    >  3:73970/1‑149 (MQ=255)                                                                                                                                         cGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCa    >  2:336891/1‑149 (MQ=255)                                                                                                                                         cGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCa    >  2:275974/1‑149 (MQ=255)                                                                                                                                          gggTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCAc   <  1:275974/149‑1 (MQ=255)                                                                                                                                          gggTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCAc   <  6:10531/149‑1 (MQ=255)                                                                                                                                           ggTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCAcc  <  6:188954/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                    CCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACC  >  NC_002947/4896306‑4896592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.