New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5514375	44 (0.790)	5 (0.090)	4/248	NT	10.8%	coding (270/516 nt)	mnaT	L‑amino acid N‑acyltransferase
	?	NC_002947	= 5514430	40 (0.750)					coding (325/516 nt)	mnaT	L‑amino acid N‑acyltransferase

CGATGAAACCGGCGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCGCAGGTGGGGGTTAAGTTTGGCCGCTGGCTTGATCTGAC  >  NC_002947/5514282‑5514578                                                                                                                                                     |                                                                                                                                                     cGATGAAACCGGCGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAAc                                                                                                                                                      <  6:238394/149‑1 (MQ=255)   aTGAAACCGGCGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACgc                                                                                                                                                    >  1:346254‑M2/1‑147 (MQ=255)    tGAAACCGGCGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACgcg                                                                                                                                                   <  5:81519‑M2/149‑4 (MQ=255)     gAAACCGGCGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACgcgc                                                                                                                                                  <  1:297607‑M2/149‑5 (MQ=255)             cGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGAt                                                                                                                                          <  3:188273/149‑1 (MQ=255)             cGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGAt                                                                                                                                          <  8:296765/149‑1 (MQ=255)               tGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGAtgt                                                                                                                                        <  2:297607/149‑1 (MQ=255)                  tGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTgg                                                                                                                                      >  2:119298/1‑148 (MQ=255)                    gggTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCa                                                                                                                                    >  8:154431/1‑148 (MQ=255)                         tGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCAtg                                                                                                                              <  2:276615/149‑1 (MQ=255)                           ccTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCAtgtg                                                                                                                            <  4:306877/149‑1 (MQ=255)                           ccTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCAtgt                                                                                                                             >  1:225263/1‑148 (MQ=255)                           ccTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCAtgt                                                                                                                             >  3:194740/1‑148 (MQ=255)                                      gactggcgacCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGc                                                                                                                 >  2:346046/1‑149 (MQ=255)                                      gactggcgacCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGc                                                                                                                 >  4:288594/1‑149 (MQ=255)                                             gacCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAg                                                                                                          >  5:123822/1‑149 (MQ=255)                                                cTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGt                                                                                                       >  4:235420/1‑149 (MQ=255)                                                 tttCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTg                                                                                                      >  6:106827/1‑149 (MQ=255)                                                   tCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTg                                                                                                      <  2:225263/147‑1 (MQ=255)                                                          cTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAg                                                                                             >  2:39992/1‑149 (MQ=255)                                                          cTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAg                                                                                             <  4:194740/149‑1 (MQ=255)                                                             tCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGc                                                                                            <  1:39992/147‑1 (MQ=255)                                                                ccTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCgg                                                                                       <  8:225832/149‑1 (MQ=255)                                                                 cagACCGTTGAGCACACGGTGTACGTGCGCAGCCACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGAAGCGATCGAGCGTTGCATTGCAGCTTCGGt                                                                                      >  2:151438/3‑149 (MQ=255)                                                                   gACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTAGATGCCGGCGCTGGTCGAACGCGCGCGCGGATGTCGCAAGCATGTCATGGTGGCAGCGATCGAGCGAGGCAATGCAGCTTCGGTgc                                                                                    >  2:287694/1‑149 (MQ=255)                                                                          gAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGACAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCa                                                                             >  1:90186/1‑149 (MQ=255)                                                                           aGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCAt                                                                            <  6:81519/149‑1 (MQ=255)                                                                                   gtgtACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCt                                                                    >  6:53437/1‑149 (MQ=255)                                                                                        cGTGCGCAGCTACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCt                                                               <  5:104408/149‑1 (MQ=255)                                                                                         gTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACgcgcacgtacaccgagtgctcaacggtcaggcgaaagccctcgaaaggtcgccagtcgccaaacgaggcataccccagcacgccggtt                                                              <  5:190220‑M2/149‑89 (MQ=255)                                                                                             gcAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACgcgcacgtacaccgagtgctcaacggtcaggcgaaagccctcgaaaggtcgccagtcgccaaacgaggcataccccagcacgccg                                                                 >  5:20109‑M2/1‑57 (MQ=255)                                                                                             gcAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACgcgcacgtacaccgagtgctcaacggtcaggcgaaagccctcgaaaggtcgccagtcgccaaacgaggcataccccagcacgccg                                                                 <  6:20109‑M2/142‑86 (MQ=255)                                                                                             gcAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCgtg                                                          <  1:346046/149‑1 (MQ=255)                                                                                             gcAGCGACCAGCGTGGCAAAGGGATCGGGCCGGTGTTGATGGCGGCGCTGGTCGCTcgcacgtacaccgagtgctcaacggtcaggcgaaagccctcgaaaggtcgccagtcgccaaacgaggcataccccagcacgccggtttcatc                                                           <  4:47483‑M2/149‑93 (MQ=255)                                                                                              cAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACgcgcacgtacaccgagtgctcaacggtcaggcgaaagccctcgaaaggtcgccagtcgccaaacgaggcataccccagcacgccggtttcatc                                                         >  6:190220‑M2/1‑56 (MQ=255)                                                                                                   aCCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGACAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGAcc                                                    >  5:370764/1‑149 (MQ=255)                                                                                                       gCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGc                                                                                                         >  5:110808/1‑92 (MQ=255)                                                                                                       gCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGc                                                                                                         <  6:110808/92‑1 (MQ=255)                                                                                                       gCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGc                                                 >  5:44882/1‑148 (MQ=255)                                                                                                        cGTGGCAAAGGGCTCGGGCCGGTGGTGATGGCGGCGCTGGTCGATCGCGCGCGCGGATGTCGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGGGGTGACCGGCCa                                               <  1:151438/149‑1 (MQ=255)                                                                                                            gCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATg                                           >  8:316951/1‑149 (MQ=255)                                                                                                            gCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATg                                           <  3:235420/149‑1 (MQ=255)                                                                                                               aaGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCg                                        <  7:154431/149‑1 (MQ=255)                                                                                                                   gCTAGGGCCGGTGTTGATGGCGGAGCAGGACGAACCCGCGCGCGCATGTTGCAAGGATCTGATGGGGGCAGCGATGGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATCAGCGGCTGGGCTTCGGGGTGACCGGGCAGATGACgacgg                                    >  4:16612/1‑145 (MQ=255)                                                                                                                       gggCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCGCAGGTggg                                <  5:106827/149‑1 (MQ=255)                                                                                                                        ggCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGGGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCGCAGGTgggg                               <  7:184304/149‑1 (MQ=255)                                                                                                                                        ggcgCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCgtgg                                                         >  7:100370/1‑107 (MQ=255)                                                                                                                                        ggcgCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCgtgg                                                         <  8:100370/107‑1 (MQ=255)                                                                                                                                                tCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCGCAGGTGGGGGTTAAGTTTGGCCGCTGGCTTGAt       <  6:123822/149‑1 (MQ=255)                                                                                                                                                 cGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCGCAGGTGGGGGTTAAGTTTGGCCGCTGGCTTGATc      >  6:341707/1‑149 (MQ=255)                                                                                                                                                     cgcgcgcgcgGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCGCAGGTGGGGGTTAAGTTTGGCCGCTGGCTTGATCTGAc  <  5:53437/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CGATGAAACCGGCGTGCTGGGGTATGCCTCGTTTGGCGACTGGCGACCTTTCGAGGGCTTTCGCCTGACCGTTGAGCACTCGGTGTACGTGCGCAGCGACCAGCGTGGCAAAGGGCTCGGGCCGGTGTTGATGGCGGCGCTGGTCGAACGCGCGCGCGGATGTGGCAAGCATGTGATGGTGGCAGCGATCGAGCGTGGCAATGCAGCTTCGGTGCGCCTGCATGAGCGGCTGGGCTTCGTGGTGACCGGCCAGATGCCGCAGGTGGGGGTTAAGTTTGGCCGCTGGCTTGATCTGAC  >  NC_002947/5514282‑5514578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.