| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5545321 = | NA (NA) | 21 (0.390) | 20/252 | NT | 44.1% | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NC_002947 | = 5621245 | 27 (0.490) | coding (19/774 nt) | PP_4939 | hypothetical protein | |||||
GCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAGCGC > NC_002947/5621103‑5621391 | gCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGAGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatc > 5:237107‑M2/1‑143 (MQ=255) cGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑ttt < 4:186806/149‑1 (MQ=255) acaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTGTTTGAGCAGATCGAACCGCCCACAACTGCTCACGACCAGCGTTACGTCACAtctataaaacaa < 7:234992‑M2/146‑13 (MQ=255) aGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAACGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCa < 1:308230/149‑1 (MQ=255) cgtcgCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGCCGAGCGTGCCGTCACTtctatcaaacaaaagataacc < 5:184010‑M2/148‑22 (MQ=255) gtcgCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGa < 5:245413/148‑1 (MQ=255) gCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactg < 7:56892‑M2/149‑27 (MQ=255) ccAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTccc > 8:197656/1‑149 (MQ=255) ctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCg < 3:29064‑M2/33‑1 (MQ=255) cctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCAt > 7:301163‑M2/113‑148 (MQ=255) cGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctag > 1:113622‑M2/1‑112 (MQ=255) cGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGAGTGACGTGACTtctatcaaacaaaagataacccactgttctttctagc < 7:248007‑M2/149‑38 (MQ=255) tgatgaATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcga < 6:280588‑M2/148‑40 (MQ=255) tgaATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTa < 3:303766/148‑1 (MQ=255) tACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcagacaaacgataacccactgttctttctagcgaaaaaaa < 6:216102‑M2/147‑46 (MQ=255) cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑tt > 5:5498/1‑149 (MQ=255) ggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑tt > 4:28265‑M2/97‑148 (MQ=255) gcgAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTc < 6:5498/147‑1 (MQ=255) ggCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTAt > 2:50987/1‑132 (MQ=255) ggCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTAt < 1:50987/132‑1 (MQ=255) ggCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACT < 8:46407‑M2/89‑1 (MQ=255) ggCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACT > 7:46407‑M2/1‑89 (MQ=255) gtttTGTAGCGATAGATACTCTCAAGGTTGTCTTTGTGCAGAGCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggc > 8:234992‑M2/1‑83 (MQ=255) gatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTgg < 2:28844‑M2/69‑1 (MQ=255) tgtAGCGATAGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGc < 2:316018/148‑1 (MQ=255) ctcgatgtcagtgcagatctgacgtcatgggcatcgtgtttgcttttcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTGAACAAGCCGCTCCTGGGc < 2:157061‑M2/71‑1 (MQ=255) gatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTg > 4:319353‑M2/75‑148 (MQ=255) atgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGaa < 3:28265‑M2/76‑1 (MQ=255) gAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTTCAACAACCCGCTCCTGGGCGTGAAAGctc < 1:32059/149‑1 (MQ=255) aaCTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactc > 5:99280‑M2/1‑67 (MQ=255) ctcAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGtt > 8:49830/1‑147 (MQ=255) tcAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttct < 2:55189‑M2/148‑87 (MQ=255) aaGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttct > 1:55189‑M2/1‑60 (MQ=255) gggTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagt > 3:290640‑M2/1‑58 (MQ=255) gggTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagt < 4:290640‑M2/132‑75 (MQ=255) gggTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaa < 1:117045‑M2/130‑73 (MQ=255) gggTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaa > 2:117045‑M2/1‑58 (MQ=255) gtgtCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGcc > 1:195241/1‑148 (MQ=255) gtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGccc < 3:319353‑M2/95‑1 (MQ=255) tgtCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTa < 5:225421/91‑1 (MQ=255) tgtCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTa > 6:225421/1‑91 (MQ=255) tCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGaa < 2:111643/63‑1 (MQ=255) tCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGc > 5:9485/1‑149 (MQ=255) atgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGc > 8:262578‑M2/52‑100 (MQ=255) tttGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCCGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCtt > 1:291321/1‑149 (MQ=255) tgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCAGTTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACg > 1:259372‑M2/42‑148 (MQ=255) tgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACg > 5:272321‑M2/42‑147 (MQ=255) tttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCa < 8:301163‑M2/108‑1 (MQ=255) cGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgac > 8:56892‑M2/1‑35 (MQ=255) cGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGAc > 8:243831/1‑138 (MQ=255) cGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGAc < 7:243831/138‑1 (MQ=255) cccACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacag < 3:323361‑M2/149‑117 (MQ=255) cacaACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtca > 4:47485‑M2/1‑31 (MQ=255) cacaACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtca < 3:47485‑M2/128‑98 (MQ=255) cacaACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATg < 2:195241/149‑1 (MQ=255) ggTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACaa > 3:234925/1‑149 (MQ=255) gTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAAt > 3:342763/1‑149 (MQ=255) acgacgATCTTGACGTCACTCTGA‑TTTGATAAGCGCACGGGATTCCCTCCGCATTTCGACTATCGGCC‑TTCAACATCCCGCTGCTGGGCGTGAAAGCTCTTGTTTTGATGCCCAGCTTCTGTCGCAGCCGCTGCCATGCAGACTTTGGc < 4:234925/149‑1 (MQ=255) cgaGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGt < 6:9485/149‑1 (MQ=255) cgaGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGt < 2:291321/149‑1 (MQ=255) gaGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTg < 7:197656/149‑1 (MQ=255) tGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggagcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgg > 5:280588‑M2/1‑10 (MQ=255) tCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAgc > 4:57324/1‑149 (MQ=255) aCTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAgcgc > 8:8412/1‑149 (MQ=255) | GCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCA‑TTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCC‑TTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAGCGC > NC_002947/5621103‑5621391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |