| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5552330 = | 42 (0.760) | 3 (0.060) | 3/242 | NT | 7.5% | coding (1559/1566 nt) | PP_4882 | iron ABC transporter permease |
| ? | NC_002947 | 5552377 = | 34 (0.650) | intergenic (+40/+621) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein | |||||
GCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCTGAAAT > NC_002947/5552230‑5552523 | gCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑Ga < 3:83888/149‑1 (MQ=255)gCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑Ga < 8:141611/149‑1 (MQ=255)accctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑Ga < 3:213406‑M1/49‑1 (MQ=255) ccctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑Ga > 4:213406‑M1/100‑148 (MQ=255) cctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaactgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGt > 3:264591‑M1/99‑149 (MQ=255) tCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTa < 5:6649/149‑1 (MQ=255) gTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGt < 4:331213/140‑1 (MQ=255) gTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGt > 3:331213/1‑140 (MQ=255) ttCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACtt > 7:177152/1‑149 (MQ=255) gcggcggcggcgCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTtcat > 2:254053/1‑149 (MQ=255) ggcggcgCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACaa < 8:53046/149‑1 (MQ=255) ccGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACt > 4:240773/1‑149 (MQ=255) ggcgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAAct < 3:136828/149‑1 (MQ=255) ggcgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAAct > 6:95609/1‑149 (MQ=255) ggcgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAAc > 2:89529/1‑148 (MQ=255) cgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAActct < 8:177152/149‑1 (MQ=255) ttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTa < 3:240773/149‑1 (MQ=255) aTTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGGAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGc < 1:254053/149‑1 (MQ=255) gtgtCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTg > 3:333529/1‑148 (MQ=255) tCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGaaa < 6:370549/148‑1 (MQ=255) ggggTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGc > 3:147824/1‑148 (MQ=255) tgtttacGGTGTATTTTCTTAATATGCTGATTTTTTTGAACAAGGCTTTAAATCTTTCCCATGCCGCCATTTGTCCTTGGCACAAGCCT‑GAGTGCCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCaa < 1:89529/143‑1 (MQ=255) ggTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCaaa < 2:295153/149‑1 (MQ=255) tttGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCg > 2:254649/1‑147 (MQ=255) gcgGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGc > 2:299513/1‑149 (MQ=255) ggATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAg < 7:195857/123‑1 (MQ=255) ggATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAg > 8:195857/1‑123 (MQ=255) ggATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGccc < 6:162406/149‑1 (MQ=255) tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCaaa < 1:274736/115‑1 (MQ=255) tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCaaa > 2:274736/1‑115 (MQ=255) actcaggcttgtgcccaggccacatggcggcctgggcaagctttcaagcctGAGTG‑CCTAGACTTCATCACAAGTTCAGTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAgg > 3:264591‑M2/52‑149 (MQ=255) aCAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAggg > 3:149898/1‑149 (MQ=255) tcaggcttgtgcccaggccacatggcggcctgggcaagctttcaagcctGAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAggg > 4:213406‑M2/50‑148 (MQ=255) tcaggcttgtgcccaggccacatggcggcctgggcaagctttcaagcctGAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGt < 3:213406‑M2/100‑1 (MQ=255) gCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAActct > 5:84503/1‑76 (MQ=255) gCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAActct < 6:84503/76‑1 (MQ=255) gCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCtttt < 4:147824/147‑1 (MQ=255) cAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCa > 4:7481/1‑146 (MQ=255) cAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCa > 3:147864/1‑146 (MQ=255) cAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATa < 4:147864/148‑1 (MQ=255) cgccATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGa > 7:104721/1‑87 (MQ=255) cgccATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGa < 8:104721/87‑1 (MQ=255) ccATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTgg < 3:7481/149‑1 (MQ=255) cTGGTCACAAGCCT‑GAGTG‑CATAGACTTCATCACAAGTTCACTTTAAAACTCTAACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCACAACCCAAGAGGCTAACAAAAATCTTTTCATAGACCTTGCGAAAcacac > 8:61920/1‑145 (MQ=255) cacaAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCttt > 7:309125/1‑122 (MQ=255) cacaAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCttt < 8:309125/122‑1 (MQ=255) caagcctGAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCt < 5:95609‑M2/142‑1 (MQ=255) gcctGAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCa > 2:301536‑M2/5‑120 (MQ=255) cctGAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAACACTCTTTTCTTAGACCTTGGGACACCCTCGAGATCTGaaa > 4:36834‑M2/4‑149 (MQ=255) t‑GAGTG‑CCTAGACTTAAACACAAGTTCACTTTAAAACTATCACTAGCCAGTTGAAAGCAAAGAACAAGCTCTTAGATACAACAAGCCCCACACAAGAGGGTAAAAAAAAAAATTTAATAGAAATTGGCAAACACTCTAAATCTGAAat > 5:220917/1‑148 (MQ=255) | GCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCT‑GAGTG‑CCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCTGAAAT > NC_002947/5552230‑5552523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |