Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 287,067 G→C 17.2% P19R (CCG→CGG) ‡ tauB‑II ← taurine ABC transporter ATP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947287,0670GC17.2% 89.4 / 12.4 40P19R (CCG→CGG) ‡tauB‑IItaurine ABC transporter ATP‑binding protein
Reads supporting (aligned to +/- strand):  ref base G (15/18);  new base C (4/3);  total (19/21)
Fisher's exact test for biased strand distribution p-value = 6.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01

CGGCACACCATCGAGGGTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCTTGCTGCTTGAGG  >  NC_002947/286919‑287214
                                                                                                                                                    |                                                                                                                                                   
cGGCACACCATCGAGGGTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCg                                                                                                                                                     <  1:195376/149‑1 (MQ=255)
      acCATCGAGGGTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGc                                                                                                                                               >  3:202937/1‑149 (MQ=255)
      acCATCGAGGGTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGc                                                                                                                                               <  4:206932/149‑1 (MQ=255)
         aTCGAGGGTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCCCGGTGCTgg                                                                                                                                            <  6:307947/149‑1 (MQ=255)
         aTCGAGGGTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCCCGGTGCTgg                                                                                                                                            >  5:307947/1‑149 (MQ=255)
                gTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTgg                                                                                                                                     <  2:164892/149‑1 (MQ=255)
                                       gacgaAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTc                                                                                                                >  1:154620/1‑147 (MQ=255)
                                          gaAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCt                                                                                                           >  4:20985/1‑149 (MQ=255)
                                              ccGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAg                                                                                                       <  7:194837/149‑1 (MQ=255)
                                               cGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGc                                                                                                      <  3:20985/149‑1 (MQ=255)
                                                  cGATGAGGTTGAGCTGTTTGGTCTTGCCGCTGCCGTAAGGCCCCTGGGCCACCAGCAGTTGGCGTGGTCCCTGGCTCTGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGAt                                                                                                                      <  2:353139/130‑1 (MQ=255)
                                                  cGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGAt                                                                                                                      >  1:353139/1‑130 (MQ=255)
                                                         gTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGACCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGa                                                                                            >  1:219486/1‑149 (MQ=255)
                                                                  tGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCggg                                                                                                                                                   <  1:200240/85‑1 (MQ=255)
                                                                  tGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCggg                                                                                                                                                   >  2:200240/1‑85 (MQ=255)
                                                                      gTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGAt                                                                                >  1:5749/1‑148 (MQ=255)
                                                                           gCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTggg                                                                                                                                    >  8:331569/1‑91 (MQ=255)
                                                                           gCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTggg                                                                                                                                    <  7:331569/91‑1 (MQ=255)
                                                                                          ccccAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGgcg                                                           <  2:219486/149‑1 (MQ=255)
                                                                                            ccAGGCCCACCAGCAGATGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCCGGGTCCTGGCGCCTGGGTACTGTGCGCTGAAGCGATCCAGCTCGAGCAAGGCCATGACGGGCTCAGGAACACTTAGGAAGCAACTAGGCGCt                                                         >  2:343071/1‑149 (MQ=255)
                                                                                                      gagcagTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGc                                               <  7:315080/148‑1 (MQ=255)
                                                                                                      cagcagTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGAt                                                                                <  6:208765/116‑1 (MQ=255)
                                                                                                      cagcagTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGAt                                                                                >  5:208765/1‑116 (MQ=255)
                                                                                                           gTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGagta                                          <  2:154620/149‑1 (MQ=255)
                                                                                                            ttGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGagtag                                         >  1:174666/1‑149 (MQ=255)
                                                                                                               gCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTcc                                      <  4:202937/149‑1 (MQ=255)
                                                                                                                 gTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTc                                                                                                                >  8:12037/1‑73 (MQ=255)
                                                                                                                 gTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTc                                                                                                                <  7:12037/73‑1 (MQ=255)
                                                                                                                   ggTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGgca                                  <  1:146913/149‑1 (MQ=255)
                                                                                                                           gCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTATGGAAGGAACTTGGCGCTGACGTACGGAGAGTAGTCCGGCAGCAGTGCt                          >  4:261542/1‑149 (MQ=255)
                                                                                                                             tCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGATCGAGCAAGGCCATGACGGGATCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTc                        >  3:167553/1‑149 (MQ=255)
                                                                                                                               aGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTc                        <  2:174666/147‑1 (MQ=255)
                                                                                                                                tgttgttATCGGCCAGCACCGGGGGGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGAc                     <  4:167553/148‑1 (MQ=255)
                                                                                                                                     ccaggcgCCAGCACCCCGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGa                      >  8:290960/7‑143 (MQ=255)
                                                                                                                                     ccaggcgCCAGCACCCCGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGa                      <  7:290960/137‑1 (MQ=255)
                                                                                                                                        tCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCtt             >  3:152673/1‑149 (MQ=255)
                                                                                                                                        ggcgCCAGCACCCCGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTggaa                                                                      <  6:259377/89‑1 (MQ=255)
                                                                                                                                        ggcgCCAGCACCCCGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTggaa                                                                      >  5:259377/4‑92 (MQ=255)
                                                                                                                                         cGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCTtg            >  5:231721/1‑149 (MQ=255)
                                                                                                                                           gCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCTtgct          >  4:323953/1‑149 (MQ=255)
                                                                                                                                               gCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCTTGCTGCtt      <  1:343071/149‑1 (MQ=255)
                                                                                                                                                 aCCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCTTGCTGCTTGa    <  4:152673/149‑1 (MQ=255)
                                                                                                                                                   cGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCTTGCTGCTTGAgg  <  2:5749/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CGGCACACCATCGAGGGTGATGTGACCGCCACTGGGGGCGACGAAGCCGGCGATGAGGTTGAGCAGTGAGGTCTTGCCGCTGCCGGAAGGCCCCAGGGCCACCAGCAGTTGGCGTGGTCCCAGGCTCAGGTTGATATCGGCCAGCACCGGGGTGCTGGCGCCTGGGTACTGTGCGCTGATGCGCTCCAGCTCGAGCAAGGCCATGACGGGCTCCGGATCAGTTTGGAAGGAACTTGGCGCTGACGTACGGCGAGTAGTCCGGCAGCACTGCTTCGACTTTGCCTTGCTGCTTGAGG  >  NC_002947/286919‑287214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑