| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,903,076 | T→G | 9.7% | intergenic (+41/+74) | PP_3445 → / ← ilvA‑I | hypothetical protein/threonine deaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,903,076 | 0 | T | G | 9.7% | 199.0 / 10.1 | 72 | intergenic (+41/+74) | PP_3445/ilvA‑I | hypothetical protein/threonine deaminase |
| Reads supporting (aligned to +/- strand): ref base T (28/36); new base G (3/3); total (32/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.47e-01 | |||||||||||
CCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGA > NC_002947/3902929‑3903224 | ccATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCtt < 5:45983/149‑1 (MQ=255)ccATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCtt > 3:72483/1‑149 (MQ=255) ggCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTcgggc < 4:72483/149‑1 (MQ=255) ggCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTcgggc > 5:176002/1‑149 (MQ=255) cccGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTcgggcggg < 8:16448/149‑1 (MQ=255) ccGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCgggcgggg > 3:142798/1‑149 (MQ=255) aGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGggcggggcgg < 2:128235/149‑1 (MQ=255) ggATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGACCGCCCCGCCCGAAGGGCAGGGCGATc < 6:317013/147‑1 (MQ=255) ggATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGACCGCCCCGCCCGAAGGGCAGGGCGATc > 5:317013/1‑147 (MQ=255) gATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACg > 4:42958/1‑149 (MQ=255) ccGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAg < 4:199251/148‑1 (MQ=255) ccGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAg < 6:193957/148‑1 (MQ=255) cGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGc > 4:275544/1‑148 (MQ=255) aggaCTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGaa < 4:205306/146‑1 (MQ=255) cTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAAcaca < 7:47352/149‑1 (MQ=255) cTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGACCGCCCCGCCCGAAGGGCAGGGCGATc < 2:245314/135‑1 (MQ=255) cTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGACCGCCCCGCCCGAAGGGCAGGGCGATc > 1:245314/1‑135 (MQ=255) ttCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcag > 8:178472/1‑149 (MQ=255) ttCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcag > 6:360824/1‑149 (MQ=255) ttCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcag > 2:284754/1‑149 (MQ=255) cAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcag < 3:192438/147‑1 (MQ=255) aGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcaggc‑gg > 3:36129/1‑149 (MQ=255) cTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACg > 5:160388/1‑129 (MQ=255) cTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACg < 6:160388/129‑1 (MQ=255) cGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcaggc‑ggcaggcg < 3:275544/148‑1 (MQ=255) gCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCa < 8:287680/123‑1 (MQ=255) gCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCa > 7:287680/1‑123 (MQ=255) gCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcaggc‑ggcag < 4:182819/144‑1 (MQ=255) gCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcaggc‑ggcag > 3:182819/1‑144 (MQ=255) gCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACaggc‑ggcaggcggc > 2:286553/1‑149 (MQ=255) cAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAgg > 6:272613/1‑149 (MQ=255) aaaaGCCTGGAAACGTTCCTCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAgg < 8:95486/148‑1 (MQ=255) aaaaGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAaca < 6:193019/125‑1 (MQ=255) aaaaGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAaca > 5:193019/1‑125 (MQ=255) aaaaGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGc > 3:89335/1‑149 (MQ=255) aaaaGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGc > 5:245295/1‑149 (MQ=255) aaaaGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGc < 8:218462/149‑1 (MQ=255) gAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTgg > 3:26883/1‑149 (MQ=255) aaaCGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGc < 6:176002/149‑1 (MQ=255) aaaCGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGc < 1:65205/149‑1 (MQ=255) gTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGca > 1:271730/1‑149 (MQ=255) cGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAg < 7:245574/87‑1 (MQ=255) cGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAg > 8:245574/1‑87 (MQ=255) cGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAg > 1:343930/1‑148 (MQ=255) ggCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCTGAAGCCCAgg > 1:123826/1‑148 (MQ=255) cTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAAc < 4:142798/149‑1 (MQ=255) ttCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGc < 7:178472/148‑1 (MQ=255) ttCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGc < 1:284754/148‑1 (MQ=255) ttCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGc < 3:42958/148‑1 (MQ=255) cATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCtt < 4:36129/148‑1 (MQ=255) cATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCtt < 5:360824/148‑1 (MQ=255) cgcgAGCGTTTAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGCCTGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTAc < 1:286553/149‑1 (MQ=255) gcgAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGAcgg > 7:166808/1‑99 (MQ=255) gcgAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGAcgg < 8:166808/101‑3 (MQ=255) gcgAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGc > 3:54579/1‑149 (MQ=255) gAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCCTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAg < 1:200895/127‑1 (MQ=255) gAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCCTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAg > 2:200895/1‑127 (MQ=255) cGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGt < 4:54579/149‑1 (MQ=255) gTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGtt > 6:140450/1‑149 (MQ=255) gTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGtt < 6:245295/149‑1 (MQ=255) gTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGtt > 1:14816/1‑149 (MQ=255) gAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGt < 2:14816/148‑1 (MQ=255) aTTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGt > 7:58157/1‑149 (MQ=255) cTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGt < 5:272613/149‑1 (MQ=255) gTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTAc < 2:271730/149‑1 (MQ=255) ccTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTTAGCCCAGGAACAGCTTGTACGCCGGGTTGt < 5:104744/128‑1 (MQ=255) ccTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTTAGCCCAGGAACAGCTTGTACGCCGGGTTGt > 6:104744/1‑128 (MQ=255) ccTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCgg > 3:142260/1‑148 (MQ=255) ccTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCgg < 4:26883/148‑1 (MQ=255) aGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTAcccc < 5:140450/149‑1 (MQ=255) ggAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCa < 2:343930/149‑1 (MQ=255) gagaTCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCAt < 8:58157/149‑1 (MQ=255) gaccgccccgcccGAAGGGCAGGGCGATCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGt > 1:65364/4‑107 (MQ=38) gaccgccccgcccGAAGGGCAGGGCGATCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGt < 2:65364/104‑1 (MQ=38) ccctgccctTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGtt > 2:134182/1‑112 (MQ=255) ccctgccctTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGtt < 1:134182/112‑1 (MQ=255) cctgccctTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGc > 7:40949/1‑59 (MQ=255) cctgccctTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGc < 8:40949/59‑1 (MQ=255) ttCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTcc < 2:120667/117‑1 (MQ=255) ttCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTcc > 1:120667/1‑117 (MQ=255) ttCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑CGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGACCAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGa > 7:119121/1‑149 (MQ=255) | CCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGC‑GGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGA > NC_002947/3902929‑3903224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |