Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,909,234 | A→T | 9.6% | S395C (AGC→TGC) ‡ | PP_3450 → | TPR repeat‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,909,234 | 0 | A | T | 9.6% | 139.7 / 5.7 | 52 | S395C (AGC→TGC) ‡ | PP_3450 | TPR repeat‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (24/23); new base T (2/3); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 |
GCCGTTGCGCCATGCCCGACCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGACTGGGCGCTGGGCGCCGCCAT > NC_002947/3909088‑3909379 | gCCGTTGCGCCATGCCCGACCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTT‑GGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGcc > 6:292196/1‑149 (MQ=255) gTTGCGCCATGCCCGACCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTT‑GGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGc < 5:292196/149‑1 (MQ=255) cgcCATGCCCGACCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCa < 1:343853/148‑1 (MQ=255) ccATGCCCGACCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGa > 7:202249/1‑148 (MQ=255) cccGACCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAgcgc > 7:222654/1‑149 (MQ=255) ccGACCAACCGGGTGAGGCGGTGGGCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCCACCGTGTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTGCGACACCGCGCAGCCGATCTGGCGCAGCCTGCCAGACAGAGcc > 2:228915/1‑149 (MQ=255) aCCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCTGTCTGGCAGGCTGCGccaga < 2:59989/149‑4 (MQ=255) cAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTAc < 1:45727/149‑1 (MQ=255) cAACCGGGAGAGGAGGTGGTCTACTACCCGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCAACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCATTGAc > 6:65080/1‑149 (MQ=255) aCCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTAcc > 5:252252/1‑148 (MQ=255) ggTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACGCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCGTTACCGATaa > 4:9659/1‑149 (MQ=255) aGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGc < 1:72295/148‑1 (MQ=255) gCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGAAACCGTCTACAGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCg > 6:296799/1‑149 (MQ=255) ggtggtCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGcc > 2:61071/1‑149 (MQ=255) ggtggtCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGcc < 8:222654/149‑1 (MQ=255) tactacCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGc > 5:159237/1‑149 (MQ=255) tacCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGc > 7:138901/1‑149 (MQ=255) ggCTGCCGAGGGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGa < 4:300361/108‑1 (MQ=255) ggCTGCCGAGAGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGa > 3:300361/1‑108 (MQ=255) cTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCgcggc < 1:61071/149‑1 (MQ=255) ccGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGgcgcg > 7:160694/1‑149 (MQ=255) cGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGgcgcgc < 8:138901/149‑1 (MQ=255) gAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCt < 7:80477/149‑1 (MQ=255) gAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCt > 8:80477/1‑149 (MQ=255) gAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCt < 6:252252/149‑1 (MQ=255) gTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAAt > 7:47261/1‑149 (MQ=255) gCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGc < 6:115798/149‑1 (MQ=255) cAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATg < 8:202249/149‑1 (MQ=255) ccGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATgca < 4:134216/148‑1 (MQ=255) ccGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATg > 3:134216/1‑146 (MQ=255) ccGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCAGCCAGACAGCGCCTATACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGTGCTGAATGCAGGCGACGCCGATGCAGCAcgccg < 1:228915/149‑1 (MQ=255) gCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTg > 6:123364/1‑149 (MQ=255) gCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGc < 6:159237/149‑1 (MQ=255) gCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGc < 5:296799/149‑1 (MQ=255) ctcTCGAAGCGGCCGGCGACTCCGAAACGGCCGAGCCGTTCTGGCGCAGCCTGCCAGACAGCGACTTTACCGATAATGCCCGGCTCACCGCTGCCGGCGGCGCGCTGAATGCAGGCTACGCGGATGCATCAGGCCGCTACTGGGActct < 8:98815/147‑1 (MQ=255) tCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGa > 1:104385/1‑105 (MQ=255) tCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGa < 2:104385/105‑1 (MQ=255) tCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGcc > 3:96099/1‑149 (MQ=255) gAAGCGGCCGGCGACTCCGAAACCGCCCAGGCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGc < 8:250129/78‑1 (MQ=255) gAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGc > 7:250129/1‑78 (MQ=255) ggccggcGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACg < 7:200437/137‑1 (MQ=255) ggccggcGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACg > 8:200437/1‑137 (MQ=255) cGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAgcg > 8:115805/1‑149 (MQ=255) tCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCTCCTCACCGCTGCCCGCGCCGCGCTGAATGCAGGCGACGCCGATGCACCACGCCGCTACTGGGACGCTGCCGCGCACCACAGAGCtga > 6:102529/1‑149 (MQ=255) ccGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCtgat < 5:123364/149‑1 (MQ=255) gAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCtgctga > 3:270817/1‑149 (MQ=255) ccGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGActgg < 8:47261/149‑1 (MQ=255) ggCGCTGTCTGGCAGGCTGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGActgggcgctgggcg < 3:327865/144‑1 (MQ=255) ggCGCTGTCTGGCAGGCTGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGActgggcgctgggcg > 4:322537/1‑144 (MQ=255) ggCGCTGTCTGGCAGGCTGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGActgggcgctgggcg < 3:322537/144‑1 (MQ=255) ggCGCTGTCTGGCAGGCTGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGActgggcgctgggcg > 4:327865/1‑144 (MQ=255) cgcAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCTCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGACTGGGCGCTGGGCGCCGCCAt < 5:65080/149‑1 (MQ=255) | GCCGTTGCGCCATGCCCGACCAACCGGGTGAGGCGGTGGTCTACTACCAGGCTGCCGAGCGTTTGGGCGACCCTGGCAACCGTCTACCGCTGGCCTACGCACTCGAAGCGGCCGGCGACTCCGAAACCGCCCAGCCGATCTGGCGCAGCCTGCCAGACAGCGCCTTTACCGATAATGCCCGCCTCACCGCTGCCCGCGGCGCGCTGAATGCAGGCGACGCCGATGCAGCACGCCGCTACTGGGACGCTGCCGCGCACCAGAGCGCTGATGACTGGGCGCTGGGCGCCGCCAT > NC_002947/3909088‑3909379 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |