Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,960,521 | A→T | 7.7% | intergenic (‑137/‑192) | mnxG ← / → PP_3491 | manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,960,521 | 0 | A | T | 7.7% | 139.1 / 3.3 | 52 | intergenic (‑137/‑192) | mnxG/PP_3491 | manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein |
Reads supporting (aligned to +/- strand): ref base A (27/21); new base T (2/2); total (29/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.30e-01 |
GCGTCGACATGCTGCACCTCCGGGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTC > NC_002947/3960375‑3960669 | gcgTCGACATGCTGCACCTCCGGGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATc > 4:88937/1‑149 (MQ=255) cgTCGACATGCTGCACCTCCGTGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGCATACCCCAGCAGGATTCCCCGATTCg > 8:159808/1‑149 (MQ=255) gTCGACATGCTGCACCTCCGGGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCgg < 3:16003/149‑1 (MQ=255) cATGCTGCAACTCCGGGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTTCCCCGATTCGGGGGaa < 7:159808/149‑2 (MQ=255) aTGCTGCACCTCCGGGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGATTCGGGGGaac < 3:341515/149‑3 (MQ=255) cGGGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCTCGAATCGGGGGACGGAATCCCGTg < 8:52617/147‑1 (MQ=255) cacaGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCa > 8:82395/1‑148 (MQ=255) acaGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCa > 2:186371/1‑147 (MQ=255) aGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCGAGAAGATAAGTTCTTTATTTATCTTTTACTTGTAGGATGAACCGCAACGGATTGGGGAGGATCCCCCAGCAGCTTCCCGCGAATCGGGGGACGGAATCCCGTGGGGGCATAgg > 8:197807/1‑149 (MQ=255) tctcTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGgctgc > 2:138738/1‑149 (MQ=255) ggggAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACaa < 4:135723/149‑1 (MQ=255) ggAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAgc > 2:319015/1‑149 (MQ=255) ggAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAgc < 7:82395/149‑1 (MQ=255) gCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAgcgcg > 2:126460/1‑149 (MQ=255) gAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCt > 1:163910/1‑149 (MQ=255) cAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCggg < 1:301865/89‑1 (MQ=255) cAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCggg > 2:301865/1‑89 (MQ=255) aagaaAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCACGAATCGGGGGACGGAATACCGTGGGGGCAAAGGCTGCTCCACAACCGCGCGCTGGCCTCACACAAGGTaa > 5:199041/1‑148 (MQ=255) agaaAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTaaa > 2:314905/1‑148 (MQ=255) ttCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACg > 6:196853/1‑149 (MQ=255) cAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGTGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCTTGGGGGCAAAGGATGCTCCACAAGCGCGCTCTGGCGTCACACAAGGTAATAACGCACgg > 1:251057/1‑148 (MQ=255) tatTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTAcc > 3:199580/1‑149 (MQ=255) aaTCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCtt < 1:319015/148‑1 (MQ=255) aaTCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTg > 6:320998/1‑149 (MQ=255) cAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGca > 2:175217/1‑148 (MQ=255) aTAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACaa > 1:283540/1‑149 (MQ=255) aCTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAAtt < 1:175217/148‑1 (MQ=255) gTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGa > 3:341971/1‑149 (MQ=255) tACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCg < 8:58915/147‑1 (MQ=255) tACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCg > 7:58915/1‑147 (MQ=255) cGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATtg < 1:314905/149‑1 (MQ=255) gagacaCCGCAACGGATTGGGGTGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATtgt < 6:199041/144‑1 (MQ=255) cAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTc < 4:110568/140‑1 (MQ=255) cAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTc > 3:110568/1‑140 (MQ=255) cAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCaa < 3:88937/149‑1 (MQ=255) aTTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGc < 5:320998/149‑1 (MQ=255) ttGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGTGCAAAGGCTTCACCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCa < 7:197807/149‑1 (MQ=255) gaggaTCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCa < 5:196853/149‑1 (MQ=255) ccccAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCt > 2:264016/1‑149 (MQ=255) cccAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTg < 1:264016/149‑1 (MQ=255) cccAGCAGGTTCCCCCGAACCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTg < 2:283780/149‑1 (MQ=255) ccAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGc > 5:228551/1‑149 (MQ=255) ccgtCCCCCGATTCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTgg > 8:135177/4‑64 (MQ=255) gTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACACGCGCGCGCTGGCATCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGAtcctc > 1:10827/1‑149 (MQ=255) gTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGAtcctc > 5:151724/1‑149 (MQ=255) gTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGAtcctc > 2:152542/1‑149 (MQ=255) ccccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGc < 3:227785/149‑1 (MQ=255) cccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGAtcct < 3:221941/143‑1 (MQ=255) cccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGAtcct > 4:221941/1‑143 (MQ=255) ccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAg < 6:296986/111‑1 (MQ=255) ccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAg > 5:296986/1‑111 (MQ=255) cGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGaa < 1:152542/149‑1 (MQ=255) aTCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTc > 2:185110/1‑149 (MQ=255) | GCGTCGACATGCTGCACCTCCGGGACACAGGATCTCTGCGGGGAGCTGGAGCAAGGTGTGTGCCAGAAGAAAAGTTCAATATTAATCAATAACTTGTACGATCAACCGCAACGGATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTC > NC_002947/3960375‑3960669 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |