Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,087,756 | G→C | 9.0% | intergenic (+405/‑21) | PP_3597 → / → PP_3598 | amino acid ABC transporter ATP‑binding protein/peptidase C26 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,087,756 | 0 | G | C | 9.0% | 160.4 / 5.0 | 53 | intergenic (+405/‑21) | PP_3597/PP_3598 | amino acid ABC transporter ATP‑binding protein/peptidase C26 |
Reads supporting (aligned to +/- strand): ref base G (25/23); new base C (2/3); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
CGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTCATGACCCACAAATACATTACCCC > NC_002947/4087614‑4087901 | cgtcgtTTCACATATCGAAAGGCTCTCGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTg < 2:324598/149‑1 (MQ=255) gtTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTTCGACCTGTcgt < 8:135962/149‑3 (MQ=255) gtTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTTCGACCTGTcgt < 3:145965/149‑3 (MQ=255) tttGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTTCGACCTGt > 4:148081/1‑145 (MQ=255) tttGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTTCGACCTGt < 3:148081/145‑1 (MQ=255) aCATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGt > 4:114418/1‑149 (MQ=255) atatCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGATTCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGa < 8:281332/149‑1 (MQ=255) atCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACa > 2:270609/1‑149 (MQ=255) tCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACat < 1:270609/149‑1 (MQ=255) tCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACa > 2:318193/1‑148 (MQ=255) ggCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGa < 5:250834/140‑1 (MQ=255) ggCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACATCTCCAAAGCTGACaactcgg > 6:250834/1‑142 (MQ=255) ctctGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCaa > 5:307775/1‑149 (MQ=255) ctctGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCaa < 1:95346/149‑1 (MQ=255) cTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACAtt < 6:307775/149‑1 (MQ=255) aTCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTgg > 3:206404/1‑149 (MQ=255) tACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTcc < 7:276346/132‑1 (MQ=255) tACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTcc > 8:276346/1‑132 (MQ=255) aCAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCaa < 6:199621/133‑1 (MQ=255) aCAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCaa > 5:199621/1‑133 (MQ=255) gACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCt > 2:3775/1‑149 (MQ=255) gAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCATCAGCAACATTGGcaac > 4:102991/1‑135 (MQ=255) gAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGcaac < 3:102991/135‑1 (MQ=255) aTCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTg‑c < 1:318193/149‑1 (MQ=255) tcgtcgCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACTAGCAACCTTCCCTg‑ct > 4:49676/1‑148 (MQ=255) ctctGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTg < 4:144642/120‑1 (MQ=255) ctctGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTg > 3:144642/1‑120 (MQ=255) tctGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCcg > 7:272667/1‑149 (MQ=255) tctGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCcg > 6:177387/1‑149 (MQ=255) aCGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCcgtc < 8:272667/147‑1 (MQ=255) cGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCtgat > 3:116511/1‑149 (MQ=255) gCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCtgatga > 7:306862/1‑149 (MQ=255) cTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTGTCGCAAACCCCTCGTCCTGATGACCAt < 1:3775/148‑1 (MQ=255) tCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATggg > 6:242650/1‑149 (MQ=255) aGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAagag < 4:206404/149‑1 (MQ=255) cagcaCCCAAGGCCCCGAGCCGTGCACCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAgcgc < 8:306862/149‑1 (MQ=255) aGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCAt < 5:242650/149‑1 (MQ=255) aGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCAt < 4:116511/149‑1 (MQ=255) cccGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTc > 5:262023/1‑60 (MQ=255) cccGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTc < 6:262023/60‑1 (MQ=255) cccGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGAcc > 5:55194/1‑148 (MQ=255) cGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGt > 1:306912/1‑149 (MQ=255) gTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTc < 3:49676/149‑1 (MQ=255) cgcCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTCATg < 2:306912/149‑1 (MQ=255) gcCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTCATGa < 3:114418/149‑1 (MQ=255) gCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTcc < 8:309702/94‑1 (MQ=255) gCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTcc > 7:309702/1‑94 (MQ=255) cttgggACAGGTTCGACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTCATGACCCACaaa > 5:286082/6‑148 (MQ=255) caacGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGa < 2:321594/125‑1 (MQ=255) caacGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGa > 1:321594/1‑125 (MQ=255) cGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTCATGACCCACAAATACAt > 8:338410/1‑149 (MQ=255) gTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTAcc > 2:306504/1‑121 (MQ=255) gTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTCATGACCCACAAATACATTAcccc > 1:286624/1‑149 (MQ=255) | CGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTG‑CGCAAACCCGTCGTCCTGATGACCATGGGCAGCCAAGAGCGCAAAGGCCATGACTACCAGGTCATGACCCACAAATACATTACCCC > NC_002947/4087614‑4087901 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |