Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,136,759 | T→A | 12.9% | intergenic (+47/+23) | PP_3640 → / ← PP_3641 | AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,136,759 | 0 | T | A | 12.9% | 70.6 / 2.9 | 31 | intergenic (+47/+23) | PP_3640/PP_3641 | AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein |
Reads supporting (aligned to +/- strand): ref base T (9/18); new base A (2/2); total (11/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.01e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.09e-01 |
GGGTATCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTC > NC_002947/4136611‑4136898 | gggTATCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGgctgct > 5:73325/1‑149 (MQ=255) gTATCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCttt > 7:216018/1‑149 (MQ=255) tCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGc < 5:307292/148‑1 (MQ=255) cAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTTGGGGTGAAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGCCCCAGCAAAGAGCGGAAATCGACAAGGCGGCCATAGTCGGGGCTGCTGTGccg > 8:337965/1‑147 (MQ=255) gcGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCAAAGCAGccc < 3:139617/148‑1 (MQ=255) tGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATg > 7:11329/1‑149 (MQ=255) gCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGtt < 6:73325/149‑1 (MQ=255) ccGCATTCACCAGCGCGTTCGCCAAGGCAGTGGGGGGGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTg < 6:249954/149‑1 (MQ=255) gCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCa < 1:162475/149‑1 (MQ=255) ttCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCGGGTTTGCTGCCGCATGTTGGAGtt > 4:14311/1‑149 (MQ=255) gTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGtt > 2:76610/1‑148 (MQ=255) cGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACg > 3:310857/1‑149 (MQ=255) cAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAAc < 3:14311/149‑1 (MQ=255) aGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAAcc < 4:310857/149‑1 (MQ=255) ggggTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACGAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCcgc < 8:1502/148‑1 (MQ=255) gTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCAc > 3:249755/1‑149 (MQ=255) gCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTg < 3:206113/149‑1 (MQ=255) cAGCCGGTGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTg < 7:337965/148‑1 (MQ=255) ccGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTaa < 8:11329/149‑1 (MQ=255) aTGACGGGCTCGGGCAGTCCTGACCCATCAAAGCTCGTAAATCGACCAAGCGGCGATAGTCTGGTCTGCTGTGCAGCCCCATGTTGCAGTTGTCAGTCTTTTACGCTGATAACCCGCGCACTTTTAACTGCCTTCCCGCGTGTGTCCat < 8:313863/149‑2 (MQ=255) gACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCCTTGAAGCAGATAAACCGCGCACTGTTAACCCCCTAACCCCGTGTGGCCAgg > 4:296133/1‑148 (MQ=255) gcgcGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGGAGCCCCAAGTTTGAATTGTAAGTAGGTGACGCTGATAACCCCCGCCCAGTTAACCCCCTATCCCCGTGTGGACAGGCAATa > 8:291063/1‑148 (MQ=255) gcatgcatGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGc > 8:183783/1‑149 (MQ=255) cATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCg < 8:251026/149‑1 (MQ=255) ccTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCAc < 7:291063/149‑1 (MQ=255) gACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCAc < 3:162029/149‑1 (MQ=255) cAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGAc < 3:296133/149‑1 (MQ=255) cATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGc < 7:183783/149‑1 (MQ=255) atggggCTGCAAAGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTTATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCg > 1:293041/3‑142 (MQ=255) atggggCTGCAAAGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCg < 2:293041/140‑1 (MQ=255) atggggCTGCAAAGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCtt > 6:283107/3‑149 (MQ=255) ggggCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTc < 4:249755/148‑1 (MQ=255) ggggCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTc < 1:76610/148‑1 (MQ=255) | GGGTATCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTC > NC_002947/4136611‑4136898 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |