| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,136,760 | T→A | 13.0% | intergenic (+48/+22) | PP_3640 → / ← PP_3641 | AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,136,760 | 0 | T | A | 13.0% | 72.2 / 3.6 | 31 | intergenic (+48/+22) | PP_3640/PP_3641 | AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein |
| Reads supporting (aligned to +/- strand): ref base T (8/17); new base A (2/2); total (11/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.56e-01 | |||||||||||
GTATCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTC > NC_002947/4136613‑4136898 | gTATCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCttt > 7:216018/1‑149 (MQ=255) tCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGc < 5:307292/148‑1 (MQ=255) cAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTTGGGGTGAAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGCCCCAGCAAAGAGCGGAAATCGACAAGGCGGCCATAGTCGGGGCTGCTGTGccg > 8:337965/1‑147 (MQ=255) gcGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCAAAGCAGccc < 3:139617/148‑1 (MQ=255) tGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATg > 7:11329/1‑149 (MQ=255) gCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGtt < 6:73325/149‑1 (MQ=255) ccGCATTCACCAGCGCGTTCGCCAAGGCAGTGGGGGGGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTg < 6:249954/149‑1 (MQ=255) gCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCa < 1:162475/149‑1 (MQ=255) ttCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCGGGTTTGCTGCCGCATGTTGGAGtt > 4:14311/1‑149 (MQ=255) gTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGtt > 2:76610/1‑148 (MQ=255) cGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACg > 3:310857/1‑149 (MQ=255) cAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAAc < 3:14311/149‑1 (MQ=255) aGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAAcc < 4:310857/149‑1 (MQ=255) ggggTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACGAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCcgc < 8:1502/148‑1 (MQ=255) gTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCAc > 3:249755/1‑149 (MQ=255) gCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTg < 3:206113/149‑1 (MQ=255) cAGCCGGTGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTg < 7:337965/148‑1 (MQ=255) ccGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTaa < 8:11329/149‑1 (MQ=255) aTGACGGGCTCGGGCAGTCCTGACCCATCAAAGCTCGTAAATCGACCAAGCGGCGATAGTCTGGTCTGCTGTGCAGCCCCATGTTGCAGTTGTCAGTCTTTTACGCTGATAACCCGCGCACTTTTAACTGCCTTCCCGCGTGTGTCCat < 8:313863/149‑2 (MQ=255) gACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCCTTGAAGCAGATAAACCGCGCACTGTTAACCCCCTAACCCCGTGTGGCCAgg > 4:296133/1‑148 (MQ=255) gcgcGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGGAGCCCCAAGTTTGAATTGTAAGTAGGTGACGCTGATAACCCCCGCCCAGTTAACCCCCTATCCCCGTGTGGACAGGCAATa > 8:291063/1‑148 (MQ=255) gcatgcatGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGc > 8:183783/1‑149 (MQ=255) cATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCg < 8:251026/149‑1 (MQ=255) ccTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCAc < 7:291063/149‑1 (MQ=255) gACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCAc < 3:162029/149‑1 (MQ=255) cAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGAc < 3:296133/149‑1 (MQ=255) cATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGc < 7:183783/149‑1 (MQ=255) atggggCTGCAAAGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTTATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCg > 1:293041/3‑142 (MQ=255) atggggCTGCAAAGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCg < 2:293041/140‑1 (MQ=255) atggggCTGCAAAGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCtt > 6:283107/3‑149 (MQ=255) ggggCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTc < 4:249755/148‑1 (MQ=255) ggggCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTc < 1:76610/148‑1 (MQ=255) | GTATCAGTCGGTGGCCGCATTCACCAGGGCGTTCGCCAAGGCAGTGGGGGTGCAGCCGGGGGCGTATCGCAGGCAGCATGACGGGCGCGGGCATGCCTGACCCAGCAAAGCGCGGAAATCGACCAAGCGGCCATAGTCGGGGCTGCTTTGCAGCCCCATGTTGCAGTTGTCAGTCGTTGACGCTGATAACCCGCGCACTGTTAACCGCCTTCCCGCGTGTGGCCAGGCAGTAATACAGCGGCACCGTCACCAGCAAGCCGAATAGCCACGACAGGTCGGCCCCTTC > NC_002947/4136613‑4136898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |